Skip to Main content Skip to Navigation
Journal articles

Hierarchical clustering with discrete latent variable models and the integrated classification likelihood

Abstract : Finding a set of nested partitions of a dataset is useful to uncover relevant structure at different scales, and is often dealt with a data-dependent methodology. In this paper, we introduce a general two-step methodology for model-based hierarchical clustering. Considering the integrated classification likelihood criterion as an objective function, this work applies to every discrete latent variable models (DLVMs) where this quantity is tractable. The first step of the methodology involves maximizing the criterion with respect to the partition. Addressing the known problem of sub-optimal local maxima found by greedy hill climbing heuristics, we introduce a new hybrid algorithm based on a genetic algorithm which allows to efficiently explore the space of solutions. The resulting algorithm carefully combines and merges different solutions, and allows the joint inference of the number K of clusters as well as the clusters themselves. Starting from this natural partition, the second step of the methodology is based on a bottom-up greedy procedure to extract a hierarchy of clusters. In a Bayesian context, this is achieved by considering the Dirichlet cluster proportion prior parameter alpha as a regularization term controlling the granularity of the clustering. A new approximation of the criterion is derived as a log-linear function of alpha, enabling a simple functional form of the merge decision criterion. This second step allows the exploration of the clustering at coarser scales. The proposed approach is compared with existing strategies on simulated as well as real settings, and its results are shown to be particularly relevant. A reference implementation of this work is available in the R-package greed accompanying the paper.
Document type :
Journal articles
Complete list of metadata

https://hal.archives-ouvertes.fr/hal-02530705
Contributor : Charles Bouveyron Connect in order to contact the contributor
Submitted on : Friday, April 3, 2020 - 10:45:18 AM
Last modification on : Friday, August 5, 2022 - 11:55:51 AM

Links full text

Identifiers

Citation

Etienne Côme, Pierre Latouche, Nicolas Jouvin, Charles Bouveyron. Hierarchical clustering with discrete latent variable models and the integrated classification likelihood. Advances in Data Analysis and Classification, Springer Verlag, In press, ⟨10.1007/s11634-021-00440-z⟩. ⟨hal-02530705⟩

Share

Metrics

Record views

179