Spatial correlation of gene expression measures in tissue microarray core analysis

Mathieu Emily (1) , Olivier Francois (1) , Didier Morel , Raphael Marcelpoil

1 TIMB

Tissue microarrays (TMAs) make possible the screening of hundreds of different tumour samples for the expression of a specific protein. Automatic features extraction procedures lead to a series of covariates corresponding to the averaged stained scores. In this article, we model the random geometry of TMA cores using voronoi tesselations. This formalism enables the computation of indices of spatial correlation of stained scores using both classical and novel approaches. The potential of these spatial statistics to correctly discriminate between diseased and non-diseased cases is evaluated through the analysis of a TMA containing samples of breast carcinoma data. The results indicate a significant improvement in the breast cancer prognosis.

Mots clés: Spatially marked point process; Voronoi tesselation; Cancer prognosis; Tissue microarrays; Random geometry

Domaines: Applications [stat.AP]

Mathieu Emily, Olivier Francois, Didier Morel, Raphael Marcelpoil. Spatial correlation of gene expression measures in tissue microarray core analysis. Computational and Mathematical Methods in Medicine, 2005, 6 (1), pp.33-39. ⟨10.1080/10273660500035795⟩. ⟨hal-00459476⟩