Normal mode theory and harmonic potential approximations

Konrad Hinsen (1)

1 LLB - UMR 12 - Laboratoire Léon Brillouin

Normal mode analysis has become one of the standard techniques in the study of the dynamics of biological macromolecules. It is primarily used for identifying and characterizing the slowest motions in a macromolecular system, which are inaccessible by other methods. This text explains what normal mode analysis is and what one can do with it without going beyond its limit of validity. The focus is on proteins, although normal mode analysis can equally well be applied to other macromolecules (e. g. DNA) and to macromolecular assemblies ranging in size from protein-ligand complexes to a whole ribosome. By definition, normal mode analysis is the study of harmonic potential wells by analytic means.

Domaines: Chimie théorique et/ou physique; Physique [physics]; Biochimie, Biologie Moléculaire

Konrad Hinsen. Normal mode theory and harmonic potential approximations. Qiang Cui; Ivet Bahar. Normal Mode Analysis, chapter 1, pp.1-16, 2005, Normal Mode Analysis : Theory and Applications to Biological and Chemical Systems, 9780429146220 (ebook). ⟨10.1201/9781420035070-7⟩. ⟨hal-02159881⟩