HAL will be down for maintenance from Friday, June 10 at 4pm through Monday, June 13 at 9am. More information
Skip to Main content Skip to Navigation
Book sections

Analyzing SBGN-AF Networks Using Normal Logic Programs: Chapter 9

Adrien Rougny 1, 2 Christine Froidevaux 2, 1 Yoshitaka Yamamoto 3 Katsumi Inoue 4
1 AMIB - Algorithms and Models for Integrative Biology
LIX - Laboratoire d'informatique de l'École polytechnique [Palaiseau], LRI - Laboratoire de Recherche en Informatique, UP11 - Université Paris-Sud - Paris 11, Inria Saclay - Ile de France
4 Inoue Laobratory
NII - National Institute of Informatics
Abstract : This chapter focuses on the systems biology graphical notation activity flow language (SBGN-AF). A large part of the signaling networks present in the biological literature are represented in a graphical form that is close to SBGN-AF. Moreover, an increasing number of databases store such networks represented in SBGN-AF or in graphical forms that can be easily translated into SBGN-AF. The SBGN-AF language contains a set of glyphs that represent biological objects and relations between these objects. SBGN-AF contains five groups of glyphs: activity nodes, auxiliary units, container nodes, modulation arcs and logical operators. Activity nodes, container nodes and logical operators are the nodes of the network; modulation arcs are the edges. The chapter gives succinctly the signification of each type of glyph. It defines a particular type of logic programs; the normal logic programs (NLPs), and gives the semantics of these programs that will be used.
Document type :
Book sections
Complete list of metadata

Contributor : Adrien Rougny Connect in order to contact the contributor
Submitted on : Tuesday, January 27, 2015 - 3:31:28 PM
Last modification on : Thursday, July 8, 2021 - 3:49:58 AM



Adrien Rougny, Christine Froidevaux, Yoshitaka Yamamoto, Katsumi Inoue. Analyzing SBGN-AF Networks Using Normal Logic Programs: Chapter 9. Logical Modeling of Biological Systems, Wiley, 2014, 978-1-84821-680-8. ⟨10.1002/9781119005223.ch9⟩. ⟨hal-01110123⟩



Record views