Skip to Main content Skip to Navigation
Conference papers

Tracing the origin of megaplasmids and secondary chromosomes in bacterial genomes

Olivier Poirion 1 Laurent Krähenbühl 1 Bénédicte Lafay 1, * 
* Corresponding author
Abstract : Component of bacterial genomes are separated into the stable, relatively slow-evolving and species-specific chromosomes, and the accessory, exchangeable and rapid-evolving plasmids. The evolution of chromosomes is related to that of plasmids through their interaction into the genome. In recent years, phylogenetically diverse bacterial species have been shown to harbour multipartite stable genomes constituted of a primary chromosome, homologous to the standard bacterial chromosome (e.g., that of Escherichia coli), supplemented with one or more essential replicons adapted to the cell cycle. Although a plasmidic origin is most commonly postulated, these elements generally exhibit both chromosomal and plasmidic features. We hypothesized that stable additional replicons (megaplasmids and secondary chromosomes) represent evolutionary intermediates between chromosome and plasmid. We investigated how the different types of bacterial replicons might be related. Using all bacterial replicons for which a complete sequence is available, we focused on replication, partition and segregation since these functions are essential to the maintenance of the replicons, and are key to the emergence of multipartite genomes. We applied a global comparative genomic analysis of all bacterial replicons based on machine learning and data mining approaches to characterize the networks of clusters of homologous proteins implied in those processes. We thus bring to light characteristic replicon adaptations among the bacterial taxa known to harbour multipartite genomes (e.g., Vibrionaceae, Burkholderiaceae, Rhizobiales...) as well as in taxa such as Bacteroidetes and Firmicutes, in which additional replicons are scarcely represented. We further highlight global trends for the secondary replicons, and conclude on the singular status of these genomic elements.
Complete list of metadata
Contributor : Publications Ampère Connect in order to contact the contributor
Submitted on : Thursday, July 4, 2013 - 11:35:36 AM
Last modification on : Monday, September 13, 2021 - 2:44:02 PM


  • HAL Id : hal-00841237, version 1


Olivier Poirion, Laurent Krähenbühl, Bénédicte Lafay. Tracing the origin of megaplasmids and secondary chromosomes in bacterial genomes. SBME, Jul 2013, Chicago, IL, United States. pp.A049 363. ⟨hal-00841237⟩



Record views