Toward interoperable bioscience data

Susanna-Assunta Sansone , Philippe Rocca-Serra , Dawn Field , Eamonn Maguire , Chris Taylor , Oliver Hofmann , Hong Fang (1) , Steffen Neumann , Weida Tong , Linda Amaral-Zettler (2) , Kimberly Begley , Tim Booth , Lydie Bougueleret , Gully Burns , Brad Chapman , Tim Clark (3) , Lee-Ann Coleman , Jay Copeland , Sudeshna Das , Antoine de Daruvar (4, 5) , Paula de Matos , Ian Dix , Scott Edmunds , Chris T Evelo , Mark J Forster , Pascale Gaudet (6) , Jack Gilbert , Carole Goble (7) , Julian L Griffin , Daniel Jacob (5) , Jos Kleinjans , Lee Harland , Kenneth Haug , Henning Hermjakob , Shannan J Ho Sui , Alain Laederach , Shaoguang Liang , Stephen Marshall , Annette Mcgrath , Emily Merrill , Dorothy Reilly , Magali Roux (8) , Caroline E Shamu , Catherine A Shang , Christoph Steinbeck , Anne Trefethen , Bryn Williams-Jones , Katherine Wolstencroft , Ioannis Xenarios , Winston Hide

1 Department of Laboratory Medicine
2 Josephine Bay Paul Center
3 CCC - Computer Chimie Centrum,
4 LaBRI - Laboratoire Bordelais de Recherche en Informatique
5 CBIB - Centre de Bioinformatique de Bordeaux
6 Northwestern University [Evanston]
7 School of Computer Science [Manchester]
8 ACASA - Agents Cognitifs et Apprentissage Symbolique Automatique

To make full use of research data, the bioscience community needs to adopt technologies and reward mechanisms that support interoperability and promote the growth of an open 'data commoning' culture. Here we describe the prerequisites for data commoning and present an established and growing ecosystem of solutions using the shared 'Investigation-Study-Assay' framework to support that vision.

Mots clés: INFORMATIQUE; BIOLOGIE; DONNEE SCIENTIFIQUE; DONNEE BIOLOGIQUE; PARTAGE DES DONNEES

Domaines: Bio-Informatique, Biologie Systémique [q-bio.QM]; Bio-informatique [q-bio.QM]

Susanna-Assunta Sansone, Philippe Rocca-Serra, Dawn Field, Eamonn Maguire, Chris Taylor, et al.. Toward interoperable bioscience data. Nature Genetics, 2012, 44 (2), pp.121-126. ⟨10.1038/ng.1054⟩. ⟨hal-00695792⟩