BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Abstract : The pairwise comparison of RNA secondary structures is a fundamental problem, with direct application in mining databases for annotating putative noncoding RNA candidates in newly sequenced genomes. An increasing number of software tools are available for comparing RNA secondary structures, based on different models (such as ordered trees or forests, arc annotated sequences, and multilevel trees) and computational principles (edit distance, alignment). We describe here the website BRASERO that offers tools for evaluating such software tools on real and synthetic datasets.
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https://hal.archives-ouvertes.fr/hal-00647725
Contributor : Alain Denise <>
Submitted on : Friday, December 2, 2011 - 3:26:13 PM
Last modification on : Thursday, April 18, 2019 - 2:57:47 PM

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Julien Allali, Cédric Saule, Cedric Chauve, Yves d'Aubenton-Carafa, Alain Denise, et al.. BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms. Advances in Bioinformatics, Hindawi Publishing Corporation, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩. ⟨hal-00647725⟩

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