RReportGenerator: automatic reports from routine statistical analysis using R.

Wolfgang Raffelsberger (1) , Yannick Krause , Luc Moulinier (1) , David Kieffer , Anne-Laure Morand , Laurent Brino , Olivier Poch (1)

1 IGBMC - Institut de génétique et biologie moléculaire et cellulaire

With the establishment of high-throughput (HT) screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization. AVAILABILITY: RReportGenerator, a user manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraff

Domaines: Biologie moléculaire

Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, et al.. RReportGenerator: automatic reports from routine statistical analysis using R.. Bioinformatics, 2008, 24 (2), pp.276-8. ⟨10.1093/bioinformatics/btm556⟩. ⟨hal-00264424⟩