Structural model for the biogenic Mn oxide produced by Pseudomonas putida

Mario Villalobos (1, 2) , Bruno Lanson (3) , Alain Manceau (3) , Brandy Toner (2) , Garrison Sposito (2)

1 LAFQA - Instituto de Geografia
2 Division of Ecosystem Sciences
3 LGIT - Laboratoire de Géophysique Interne et Tectonophysique

X-ray diffraction (XRD) and Mn K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy were combined to elaborate a structural model for phyllomanganates (layer-type 18 Mn oxide) lacking 3D ordering (turbostratic stacking). These techniques were applied to a sample produced by a common soil and freshwater bacterium (Pseudomonas putida) and to two synthetic analogs, δ-MnO2 and “acid birnessite”, obtained by the reduction of potassium permanganate with MnCl2 and HCl, respectively. To interpret the diffraction and spectroscopic data, we applied an XRD simulation technique utilized previously for well-crystallized birnessite varieties, complementing this approach with single-scattering-path simulations of the Mn K-edge EXAFS spectra. Our structural analyses revealed that all three Mn oxides have an hexagonal layer symmetry with layers comprising edge-sharing Mn 4+O 6 26 octahedra and cation vacancies, but no layer Mn 3+O 6 octahedra. The proportion of cation vacancies in the layers ranged from 6 to 17 %, these vacancies being charge-compensated in the interlayer by protons, alkali metals, and Mn atoms, in amounts that vary with the phyllomanganate species and synthesis medium. Both vacancies and interlayer Mn were most abundant in the biogenic oxide. The diffracting crystallites contained three to six randomly stacked layers, and have coherent scattering domains of 19-42 Ä in the c* direction, and 60-85 Ä in the ab plane. Thus, the Mn oxides investigated here are nanoparticles that bear significant permanent structural charge resulting from cation layer vacancies and variable surface charge from unsaturated O atoms at layer edges.

Domaines: Minéralogie

Mario Villalobos, Bruno Lanson, Alain Manceau, Brandy Toner, Garrison Sposito. Structural model for the biogenic Mn oxide produced by Pseudomonas putida. The American Mineralogist, 2006, 91, pp.489-502. ⟨10.2138/am.2006.1925⟩. ⟨hal-00193592⟩