Metal ion dependent adhesion sites in integrins: a combined DFT and QMC study on Mn2+. - Archive ouverte HAL Accéder directement au contenu
Article Dans Une Revue Journal of Physical Chemistry B Année : 2007

Metal ion dependent adhesion sites in integrins: a combined DFT and QMC study on Mn2+.

Eider San Sebastian
  • Fonction : Auteur
Jon M Matxain
  • Fonction : Auteur
Leif A Eriksson
  • Fonction : Auteur
Roland H Stote
  • Fonction : Auteur
Xabier Lopez
  • Fonction : Auteur

Résumé

The theoretical study of relative energies of different spin states of Mn2+ has been carried out for the isolated cation and for structures in which the cation is coordinated to ligands that represent the first coordination shell in a protein environment that contains a metal ion dependent adhesion site (MIDAS, found in the ligand binding domain of protein LFA-1). The calculations determine whether the ligand field generated by a prototype protein environment affects the relative energies between high, intermediate, and low spin states. Geometry optimizations and vibrational frequency calculations were carried out at the B3LYP/SKBJ+* level of theory. Single point calculations were performed at the B3LYP/6-311++G(2df,2p) and diffusion monte carlo (DMC) levels for the refinement of the electronic energies. These calculations reveal important differences in the relative energies between high/low spin complexes obtained by B3LYP and DMC and show that although both DFT and DMC show similar trends, a higher level method such as DMC is necessary for a quantitative description of the interactions between Mn2+ and its natural ligands. (G)s of acetate-type ligand binding reactions were calculated that show that the higher the spin of the manganese complex, the lower the affinity for the ligand.

Dates et versions

hal-00189176 , version 1 (20-11-2007)

Identifiants

Citer

Eider San Sebastian, Jon M Matxain, Leif A Eriksson, Roland H Stote, Annick Dejaegere, et al.. Metal ion dependent adhesion sites in integrins: a combined DFT and QMC study on Mn2+.. Journal of Physical Chemistry B, 2007, 111 (30), pp.9099-103. ⟨10.1021/jp071065s⟩. ⟨hal-00189176⟩
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