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Regulation of miR-200c/141 expression by intergenic DNA-looping and transcriptional read-through

Abstract : The miR-200 family members have been implicated in stress responses and ovarian tumorigenesis. Here, we find that miR-200c/141 transcription is intimately linked to the transcription of the proximal upstream gene PTPN6 (SHP1) in all physiological conditions tested. PTPN6 and miR-200c/141 are transcriptionally co-regulated by two complementary mechanisms. First, a bypass of the regular PTPN6 polyadenylation signal allows the transcription of the downstream miR-200c/141. Second, the promoters of the PTPN6 and miR-200c/141 transcription units physically interact through a 3-dimensional DNA loop and exhibit similar epigenetic regulation. Our findings highlight that transcription of intergenic miRNAs is a novel outcome of transcriptional read-through and reveal a yet unexplored type of DNA loop associating two closely located promoters. These mechanisms have significant relevance in ovarian cancers and stress response, pathophysiological conditions in which miR-200c/141 exert key functions.
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https://www.hal.inserm.fr/inserm-02437810
Contributor : Fatima Mechta-Grigoriou <>
Submitted on : Monday, January 13, 2020 - 10:45:20 PM
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Luciana Batista, Brigitte Bourachot, Bogdan Mateescu, Fabien Reyal, Fatima Mechta-Grigoriou. Regulation of miR-200c/141 expression by intergenic DNA-looping and transcriptional read-through. Nature Communications, Nature Publishing Group, 2016, 7 (1), pp.8959. ⟨10.1038/ncomms9959⟩. ⟨inserm-02437810⟩

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