Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Laurent Heirendt , Sylvain Arreckx , Thomas Pfau , Sebastián Mendoza , Anne Richelle , Almut Heinken , Hulda Haraldsdóttir , Jacek Wachowiak , Sarah Keating , Vanja Vlasov , Stefania Magnusdóttir , Chiam Yu Ng , German Preciat , Alise Žagare , Siu Chan , Maike Aurich , Catherine Clancy , Jennifer Modamio , John Sauls , Alberto Noronha , Aarash Bordbar , Benjamin Cousins , Diana El Assal , Luis Valcarcel , Iñigo Apaolaza , Susan Ghaderi , Masoud Ahookhosh , Marouen Ben Guebila , Andrejs Kostromins , Nicolas Sompairac , Hoai Minh Le (1) , Hoai Le , Ding Ma , Yuekai Sun , Lin Wang , James Yurkovich , Miguel Oliveira , Phan Vuong , Lemmer El Assal , Inna Kuperstein , Andrei Zinovyev , H. Scott Hinton , William Bryant , Francisco Aragón Artacho , Francisco Planes , Egils Stalidzans , Alejandro Maass , Santosh Vempala , Michael Hucka , Michael Saunders , Costas Maranas , Nathan Lewis , Thomas Sauter , Bernhard Ø. Palsson , Ines Thiele , Ronan Fleming

1 LCSB - Luxembourg Centre For Systems Biomedicine

Domaines: Optimisation et contrôle [math.OC]; Apprentissage [cs.LG]

Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián Mendoza, Anne Richelle, et al.. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature Protocols, 2019, 14 (3), pp.639-702. ⟨10.1038/s41596-018-0098-2⟩. ⟨hal-03671009⟩