The Expression Comparison Tool in Bgee

Marc Robinson-Rechavi (1, 2) , Valentine Rech de Laval (1, 2) , Frédéric B. Bastian (1, 2) , Julien Wollbrett (1, 2) , Team Bgee (1, 2)

1 Department of Ecology and Evolution
2 SIB - Swiss Institute of Bioinformatics [Lausanne]

We present Expression Comparison, a tool to compare expression patterns between species. It uses curated annotations of homology between anatomical structures, such as organs or tissues. Expression calls are based on the curated transcriptome data integrated within the Bgee database. Gene homology can be of any type, from user input. The results are presented according to conservation of pattern, as well as rank of expression per species. Expression Comparison is freely available on the Bgee website: https://bgee.org.

Domaines: Bio-Informatique, Biologie Systémique [q-bio.QM]; Evolution [q-bio.PE]; Génomique, Transcriptomique et Protéomique [q-bio.GN]

Marc Robinson-Rechavi, Valentine Rech de Laval, Frédéric B. Bastian, Julien Wollbrett, Team Bgee. The Expression Comparison Tool in Bgee. Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.4.3:1--4.3:4, 2020. ⟨hal-02535720⟩