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DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products

Abstract : Reads assignment to taxonomic units is a key step in microbiome analysis pipelines. To date, accurate taxonomy annotation of 16S reads, particularly at species rank, is still challenging due to the short size of read sequences and differently curated classification databases. The close phylogenetic relationship between species encountered in dairy products, however, makes it crucial to annotate species accurately to achieve sufficient phylogenetic resolution for further downstream ecological studies or for food diagnostics. Curated databases dedicated to the environment of interest are expected to improve the accuracy and resolution of taxonomy annotation.
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https://hal.archives-ouvertes.fr/hal-02187459
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Submitted on : Wednesday, July 17, 2019 - 8:07:14 PM
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Etienne Rifa, Marco Meola, Noam Shani, Céline Delbes, Hélène Berthoud, et al.. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. BMC Genomics, BioMed Central, 2019, 20 (1), pp.560. ⟨10.1186/s12864-019-5914-8⟩. ⟨hal-02187459⟩

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