Evolving Instrument Based on Symbiont-Host Metaphor: a Commensal Computation, Journal of Creative Music Systems, vol.2, issue.1, pp.1-10, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01596573
Defining and Simulating Open-Ended Novelty: Requirements, Guidelines, and Challenges, Theory in Biosciences, vol.135, issue.3, pp.131-161, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01323108
In silico experimental evolution: a tool to test evolutionary scenarios, BMC bioinformatics, vol.14, issue.15, p.11, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00873232
Evolvability drives innovation in viral genomes, 2nd EvoEvo Workshop, satellite workshop of CCS2016, vol.6, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01375665
Elephants don't play chess. Robotics and autonomous systems, vol.6, pp.3-15, 1990. ,
The time scale of evolutionary innovation, PLoS computational biology, vol.10, issue.9, p.1003818, 2014. ,
Semantic closure demonstrated by the evolution of a universal constructor architecture in an artificial chemistry, Journal of the Royal Society Interface, vol.14, p.20161033, 2017. ,
Evolution of functional diversification within quasispecies, Genome biology and evolution, vol.6, issue.8, pp.1990-2007, 2014. ,
High cost enhances cooperation through the interplay between evolution and self-organisation, BMC evolutionary biology, vol.16, issue.1, p.31, 2016. ,
Virtual genomes in flux: an interplay of neutrality and adaptability explains genome expansion and streamlining, Genome Biology and Evolution, vol.4, issue.3, pp.212-229, 2012. ,
Co-evolution and ecosystem based problem solving, Ecological informatics, vol.9, pp.47-58, 2012. ,
A model for genome size evolution, Bulletin of mathematical biology, vol.76, issue.9, pp.2249-2291, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01090984
Bio-reflective architectures for evolutionary innovation, pp.192-199, 2016. ,
Augmenting live coding with evolved patterns, EvoMusArt, vol.9596, pp.31-46, 2016. ,
DOI : 10.1007/978-3-319-31008-4_3
URL : http://eprints.whiterose.ac.uk/113747/1/evomusart16.pdf
New insights into bacterial adaptation through in vivo and in silico experimental evolution, Nature Reviews Microbiology, vol.10, pp.352-365, 2012. ,
Commensal host-bacterial relationships in the gut, Science, vol.292, pp.1115-1118, 2001. ,
DOI : 10.1126/science.1058709
How host-microbial interactions shape the nutrient environment of the mammalian intestine, Annual review of nutrition, vol.22, issue.1, pp.283-307, 2002. ,
EvoMachina: a novel evolutionary algorithm inspired by bacterial genome reorganisation, CCS 2016, 2016. ,
Evolutionary Rate at the Molecular Level, Nature, vol.217, pp.624-626, 1968. ,
Clustering highdimensional data: A survey on subspace clustering, pattern-based clustering, and correlation clustering, ACM Transactions on Knowledge Discovery from Data, vol.3, issue.1, pp.1-58, 2009. ,
Evolutionary consequences of coevolving targets, Evolutionary computation, vol.5, issue.4, pp.401-418, 1997. ,
DOI : 10.1162/evco.1997.5.4.401
Comparing subspace clusterings, IEEE Transactions on Knowledge and Data Engineering, vol.18, issue.7, pp.902-916, 2006. ,
DOI : 10.1109/tkde.2006.106
Subspace clustering using evolvable genome structure, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, pp.575-582, 2015. ,
DOI : 10.1145/2739480.2754709
URL : https://hal.archives-ouvertes.fr/hal-01199136
EvoMove: Evolutionary-based living musical companion, European Conference on Artificial Life (ECAL), pp.340-347, 2017. ,
DOI : 10.7551/ecal_a_057
URL : https://hal.archives-ouvertes.fr/hal-01569091
Weight-based search to find clusters around medians in subspaces, ACM Symposium on Applied Computing, p.10, 2018. ,
DOI : 10.1145/3167132.3167184
URL : https://hal.archives-ouvertes.fr/hal-01869974
Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli, Science, vol.343, pp.1366-1369, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-00961496
Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification, PLoS computational biology, vol.13, issue.3, p.1005459, 2017. ,
DOI : 10.1371/journal.pcbi.1005459
URL : https://hal.archives-ouvertes.fr/hal-01508751
Adapting the engine to the fuel: mutator populations can reduce the mutational load by reorganizing their genome structure ,
The major evolutionary transitions, Nature, vol.374, issue.6519, pp.227-232, 1997. ,
In silico gene-level evolution explains microbial population diversity through differential gene mobility, Genome biology and evolution, vol.8, issue.1, pp.176-188, 2016. ,