Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2, Nature Genetics, vol.41, issue.5, pp.585-590, 2009. ,
DOI : 10.1038/ng2142
LAPACK users' guide, 1999. ,
DOI : 10.1137/1.9780898719604
Natural selection has driven population differentiation in modern humans, Nature Genetics, vol.19, issue.3, pp.340-345, 2008. ,
DOI : 10.1038/ng1710
From evolutionary genetics to human immunology: how selection shapes host defence genes, Nature Reviews Genetics, vol.39, issue.1, pp.17-30, 2009. ,
DOI : 10.1038/nrg2698
Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model, Genetics, vol.185, issue.2, pp.587-602, 2010. ,
DOI : 10.1534/genetics.109.112391
Controlling the false discovery rate: a practical and powerful approach to multiple testing, J R Stat Soc Series B Stat Methodol, vol.57, pp.289-300, 1995. ,
Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene, The American Journal of Human Genetics, vol.74, issue.6, pp.1111-1120, 2004. ,
DOI : 10.1086/421051
outliers sometimes so frequent?, Molecular Ecology, vol.17, issue.8, pp.2061-2064, 2013. ,
DOI : 10.1111/mec.12241
Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended, Genetics, vol.186, issue.1, pp.241-262, 2010. ,
DOI : 10.1534/genetics.110.117275
URL : https://hal.archives-ouvertes.fr/hal-00842515
Loading and correlations in the interpretation of principle compenents, Journal of Applied Statistics, vol.53, issue.2, pp.203-214, 1995. ,
DOI : 10.1007/BF02293704
The signature of long-standing balancing selection at the human defensin ??-1 promoter, Genome Biology, vol.9, issue.9, p.143, 2008. ,
DOI : 10.1186/gb-2008-9-9-r143
Genomic regions exhibiting positive selection identified from dense genotype data, Genome Research, vol.15, issue.11, pp.1553-1565, 2005. ,
DOI : 10.1101/gr.4326505
Population differentiation as a test for selective sweeps, Genome Research, vol.20, issue.3, pp.393-402, 2010. ,
DOI : 10.1101/gr.100545.109
Evidence for Polygenic Adaptation to Pathogens in the Human Genome, Molecular Biology and Evolution, vol.30, issue.7, pp.1544-1558, 2013. ,
DOI : 10.1093/molbev/mst080
Genome Scans for Detecting Footprints of Local Adaptation Using a Bayesian Factor Model, Molecular Biology and Evolution, vol.31, issue.9, pp.2483-2495, 2014. ,
DOI : 10.1093/molbev/msu182
URL : https://hal.archives-ouvertes.fr/hal-01053023
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics, vol.131, pp.479-491, 1992. ,
Exploring the Occurrence of Classic Selective Sweeps in Humans Using Whole-Genome Sequencing Data Sets, Molecular Biology and Evolution, vol.31, issue.7, pp.1850-1868, 2014. ,
DOI : 10.1093/molbev/msu118
Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations, Genetics, vol.193, issue.3, pp.929-941, 2013. ,
DOI : 10.1534/genetics.112.147231
URL : https://hal.archives-ouvertes.fr/hal-00842696
A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective, Genetics, vol.180, issue.2, pp.977-993, 2008. ,
DOI : 10.1534/genetics.108.092221
URL : https://hal.archives-ouvertes.fr/halsde-00377961
Widespread Signals of Convergent Adaptation to High Altitude in Asia and America, The American Journal of Human Genetics, vol.95, issue.4, pp.394-407, 2014. ,
DOI : 10.1016/j.ajhg.2014.09.002
Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics Approach, PLoS Genetics, vol.16, issue.9, p.1000849, 2010. ,
DOI : 10.1371/journal.pgen.1000849.s006
Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution, PLoS Genetics, vol.106, issue.23, p.1002355, 2011. ,
DOI : 10.1371/journal.pgen.1002355.s012
Fast principal components analysis reveals convergent evolution of ADH1B gene in Europe and East Asia, 2015. ,
DOI : 10.1101/018143
Identifying Recent Adaptations in Large-Scale Genomic Data, Cell, vol.152, issue.4, pp.703-713, 2013. ,
DOI : 10.1016/j.cell.2013.01.035
Robust Identification of Local Adaptation from Allele Frequencies, Genetics, vol.195, issue.1, pp.205-220, 2013. ,
DOI : 10.1534/genetics.113.152462
The African Genome Variation Project shapes medical genetics in Africa, Nature, vol.344, issue.7534, pp.327-332, 2015. ,
DOI : 10.1038/ng.2283
Complex Signatures of Natural Selection at the Duffy Blood Group Locus, The American Journal of Human Genetics, vol.70, issue.2, pp.369-383, 2002. ,
DOI : 10.1086/338628
Evidence of Positive Selection on a Class I ADH Locus, The American Journal of Human Genetics, vol.80, issue.3, pp.441-456, 2007. ,
DOI : 10.1086/512485
Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency, Proceedings of the National Academy of Sciences, vol.107, issue.Supplement_2, pp.8924-8930, 2010. ,
DOI : 10.1073/pnas.0914625107
Adaptations to Climate in Candidate Genes for Common Metabolic Disorders, PLoS Genetics, vol.38, issue.2, p.32, 2008. ,
DOI : 10.1371/journal.pgen.0040032.st009
Classic Selective Sweeps Were Rare in Recent Human Evolution, Science, vol.331, issue.6019, pp.920-924, 2011. ,
DOI : 10.1126/science.1198878
Directional and balancing selection in human beta-defensins, BMC Evolutionary Biology, vol.8, issue.1, p.113, 2008. ,
DOI : 10.1186/1471-2148-8-113
Genetics in geographically structured populations: defining, estimating and interpreting FST, Nature Reviews Genetics, vol.97, issue.9, pp.639-650, 2009. ,
DOI : 10.1038/nrg2611
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687486
Generating samples under a Wright-Fisher neutral model of genetic variation, Bioinformatics, vol.18, issue.2, pp.337-338, 2002. ,
DOI : 10.1093/bioinformatics/18.2.337
Anisotropic Isolation by Distance: The Main Orientations of Human Genetic Differentiation, Molecular Biology and Evolution, vol.30, issue.3, pp.513-525, 2013. ,
DOI : 10.1093/molbev/mss259
URL : https://hal.archives-ouvertes.fr/hal-00775881
Genome wide association study identifies KCNMA1contributing to human obesity, BMC Medical Genomics, vol.453, issue.7196, p.51, 2011. ,
DOI : 10.1038/nature06902
URL : https://hal.archives-ouvertes.fr/inserm-00613044
Principal component analysis, 2005. ,
DOI : 10.1007/978-1-4757-1904-8
Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies, Bioinformatics, vol.28, issue.15, pp.2084-2085, 2012. ,
DOI : 10.1093/bioinformatics/bts315
Gene Expression Levels Are a Target of Recent Natural Selection in the Human Genome, Molecular Biology and Evolution, vol.26, issue.3, pp.649-658, 2009. ,
DOI : 10.1093/molbev/msn289
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms, Genetics, vol.74, pp.175-195, 1973. ,
Evidence for Positive Selection on a Number of MicroRNA Regulatory Interactions during Recent Human Evolution, PLoS Genetics, vol.99, issue.3, p.1002578, 2012. ,
DOI : 10.1371/journal.pgen.1002578.s013
outlier tests, Molecular Ecology, vol.65, issue.Suppl 1, pp.2178-2192, 2014. ,
DOI : 10.1111/mec.12725
The power and promise of population genomics: from genotyping to genome typing, Nature Reviews Genetics, vol.4, issue.12, pp.981-994, 2003. ,
DOI : 10.1038/nrg1226
URL : https://hal.archives-ouvertes.fr/halsde-00279787
A Genealogical Interpretation of Principal Components Analysis, PLoS Genetics, vol.27, issue.10, p.1000686, 2009. ,
DOI : 10.1371/journal.pgen.1000686.g006
The Population Reference Sample, POPRES: A Resource for Population, Disease, and Pharmacological Genetics Research, The American Journal of Human Genetics, vol.83, issue.3, pp.347-358, 2008. ,
DOI : 10.1016/j.ajhg.2008.08.005
Molecular Signatures of Natural Selection, Annual Review of Genetics, vol.39, issue.1, pp.197-218, 2005. ,
DOI : 10.1146/annurev.genet.39.073003.112420
Role of KCNMA1 in Breast Cancer, PLoS ONE, vol.7, issue.8, p.41664, 2012. ,
DOI : 10.1371/journal.pone.0041664.t004
Population Structure and Eigenanalysis, PLoS Genetics, vol.15, issue.12, p.190, 2006. ,
DOI : 1088-9051(2005)015[1576:CACSOH]2.0.CO;2
URL : http://doi.org/10.1371/journal.pgen.0020190
simuPOP: a forward-time population genetics simulation environment, Bioinformatics, vol.21, issue.18, pp.3686-3687, 2005. ,
DOI : 10.1093/bioinformatics/bti584
The ADH1B Arg47His polymorphism in East Asian populations and expansion of rice domestication in history, BMC Evolutionary Biology, vol.10, issue.1, p.15, 2010. ,
DOI : 10.1186/1471-2148-10-15
Signals of recent positive selection in a worldwide sample of human populations, Genome Research, vol.19, issue.5, 2009. ,
DOI : 10.1101/gr.087577.108
Bayesian Variable Selection for Detecting Adaptive Genomic Differences Among Populations, Genetics, vol.178, issue.3, pp.1817-1829, 2008. ,
DOI : 10.1534/genetics.107.081281
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2278048
Positive Natural Selection in the Human Lineage, Science, vol.312, issue.5780, pp.1614-1620, 2006. ,
DOI : 10.1126/science.1124309
Genome-wide detection and characterization of positive selection in human populations, Nature, vol.52, issue.7164, pp.913-918, 2007. ,
DOI : 10.1038/nature06250
Detecting Natural Selection in Genomic Data, Annual Review of Genetics, vol.47, issue.1, pp.97-120, 2013. ,
DOI : 10.1146/annurev-genet-111212-133526
Estimating F-Statistics for the Analysis of Population Structure, Evolution, vol.38, issue.6, pp.1358-1370, 1984. ,
DOI : 10.2307/2408641
Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y, Proceedings of the National Academy of Sciences, vol.111, issue.13, pp.4832-4837, 2014. ,
DOI : 10.1073/pnas.1316513111
Localizing Recent Adaptive Evolution in the Human Genome, PLoS Genetics, vol.32, issue.6, p.90, 2007. ,
DOI : 10.1371/journal.pgen.0030090.st006
Positive selection drives population differentiation in the skeletal genes in modern humans, Human Molecular Genetics, vol.19, issue.12, pp.2341-2346, 2010. ,
DOI : 10.1093/hmg/ddq107
A model-based approach for analysis of spatial structure in genetic data, Nature Genetics, vol.74, issue.6, pp.725-731, 2012. ,
DOI : 10.1006/geno.2000.6331
Two simple approximations to the distributions of quadratic forms, British Journal of Mathematical and Statistical Psychology, vol.98, issue.2, pp.273-291, 2010. ,
DOI : 10.1348/000711009X449771