, The References REFERENCES, 2005.
, Akima: interpolation of irregularly spaced data. R package version 0.5-10, 2013.
, THE PRESERVATION OF ACANTHARIANS IN FIXED PLANKTON SAMPLES1, Limnology and Oceanography, vol.15, issue.5, pp.825-827, 1970.
DOI : 10.4319/lo.1970.15.5.0825
, Intercomparison of six Mediterranean zooplankton time series, Progress in Oceanography, vol.97, issue.100, pp.97-100, 2012.
DOI : 10.1016/j.pocean.2011.11.011
URL : https://hal.archives-ouvertes.fr/hal-00724954
, Rhizaria, Current Biology, vol.24, issue.3, pp.103-107, 2014.
DOI : 10.1016/j.cub.2013.12.025
URL : http://doi.org/10.1016/j.cub.2013.12.025
, Video plankton recorder reveals high abundances of colonial Radiolaria in surface waters of the central North Pacific, Journal of Plankton Research, vol.24, issue.8, pp.797-805, 2002.
DOI : 10.1093/plankt/24.8.797
, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, vol.27, issue.16, pp.2194-2200, 2011.
DOI : 10.1093/bioinformatics/btr381
, Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness, The ISME Journal, vol.58, issue.8, pp.1344-1356, 2011.
DOI : 10.1093/nar/22.22.4673
URL : https://hal.archives-ouvertes.fr/hal-00604769
, Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing, Molecular Ecology, vol.8, issue.12, pp.3026-3042, 2015.
DOI : 10.1111/mec.13160
, Zooplankton long-term changes in the NW Mediterranean Sea: Decadal periodicity forced by winter hydrographic conditions related to large-scale atmospheric changes?, Journal of Marine Systems, vol.87, issue.3-4, pp.216-226, 2011.
DOI : 10.1016/j.jmarsys.2011.04.003
, Annual microplankton cycles in Villefranche Bay, Ligurian Sea, NW Mediterranean, Journal of Plankton Research, vol.25, issue.4, pp.323-339, 2003.
DOI : 10.1093/plankt/25.4.323
, Digital zooplankton image analysis using the ZooScan integrated system, Journal of Plankton Research, vol.32, issue.3, pp.285-303, 2010.
DOI : 10.1093/plankt/fbp124
, The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy, Nucleic Acids Research, vol.41, issue.D1, pp.597-604, 2013.
DOI : 10.1093/nar/gks1160
URL : https://hal.archives-ouvertes.fr/hal-01253994
, Climate change and marine plankton, Trends in Ecology & Evolution, vol.20, issue.6, pp.337-344, 2005.
DOI : 10.1016/j.tree.2005.03.004
, Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability, Marine Ecology Progress Series, vol.531, pp.193-206, 2015.
DOI : 10.3354/meps11322
, Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific, The ISME Journal, vol.11, issue.3, pp.515-530, 2014.
DOI : 10.1175/1520-0477(1999)080<1127:EOSSTU>2.0.CO;2
, Planktic Foraminifera, pp.129-178, 2015.
DOI : 10.1007/978-4-431-55130-0_7
, Spring distribution of larger (>64 µm) protozoans in the Atlantic sector of the Southern Ocean. Deep-sea research. Part 1. Oceanographic research papers, pp.1627-1649, 2001.
, Radiolaria: Major exporters of organic carbon to the deep ocean, Global Biogeochemical Cycles, vol.46, issue.6, 1010.
DOI : 10.1029/2008GB003221
, Protozoenstudien II. Paulinella chromatophora nov. gen., nov. spec., ein beschalter Rhizopode des Sußwassers mit blaugrunen chromatophorenartigen Einschlussen, pp.537-544, 1895.
, Hierarchical control of phytoplankton succession by physical factors, Marine Ecology Progress Series, vol.19, pp.211-222, 1984.
DOI : 10.3354/meps019211
, in the northwestern Mediterranean Sea: Relationships with hydroclimatic variability, Limnology and Oceanography, vol.51, issue.4, pp.1832-1848, 2006.
DOI : 10.4319/lo.2006.51.4.1832
, Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing, Environmental Microbiology, vol.52, issue.Suppl. 1, 2015.
DOI : 10.1111/1462-2920.12955
URL : https://hal.archives-ouvertes.fr/hal-01191731
, Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga., Proceedings of the National Academy of Sciences, pp.3690-3694, 1994.
DOI : 10.1073/pnas.91.9.3690
, Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata, Molecular Phylogenetics and Evolution, vol.44, issue.1, pp.255-266, 2007.
DOI : 10.1016/j.ympev.2006.11.001
, Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity, Molecular Ecology, vol.312, issue.s1, pp.2908-2915, 2010.
DOI : 10.1111/j.1365-294X.2010.04669.x
, Vertical distribution of picoeukaryotic diversity in the Sargasso Sea, Environmental Microbiology, vol.43, issue.5, pp.1233-1252, 2007.
DOI : 10.1016/j.ejop.2005.06.001
, Large variability of bathypelagic microbial eukaryotic communities across the world's oceans. The ISME Journal, pp.1-14, 2015.
, Identifying global synchronies in marine zooplankton populations: issues and opportunities, ICES Journal of Marine Science, vol.61, issue.4, pp.445-456, 2004.
DOI : 10.1016/j.icesjms.2004.03.022
, R: A language and environment for statistical computing, 2015.
, What you see is not what you catch: a comparison of concurrently collected net, Optical Plankton Counter, and Shadowed Image Particle Profiling Evaluation Recorder data from the northeast Gulf of Mexico. Deep Sea Research Part I: Oceanographic Research Papers, pp.129-151, 2004.
, In hot water: zooplankton and climate change, ICES Journal of Marine Science, vol.65, issue.3, pp.279-295, 2008.
DOI : 10.1093/icesjms/fsn028
, Comprehensive Model of Annual Plankton Succession Based on the Whole-Plankton Time Series Approach, PLOS ONE, vol.53, issue.3, p.119219, 2015.
DOI : 10.1371/journal.pone.0119219.s001
URL : https://hal.archives-ouvertes.fr/hal-01225074
, Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats, Environmental Microbiology, vol.58, issue.11, pp.2946-2964, 2010.
DOI : 10.1111/j.1462-2920.2010.02272.x
URL : https://hal.archives-ouvertes.fr/hal-01254021
, Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities, Applied and Environmental Microbiology, vol.75, issue.23, pp.7537-7541, 2009.
DOI : 10.1128/AEM.01541-09
, Dynamique des copépodes pélagiques en rade de Villefranche-sur-Mer à partir de prélèvements quotidiens (année 1972) Bilan quantitatif et écologique, Oceanologica Acta, vol.4, pp.405-414, 1981.
, An imaging-in-flow system for automated analysis of marine microplankton, Marine Ecology Progress Series, vol.168, pp.285-296, 1998.
DOI : 10.3354/meps168285
, Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water, Molecular Ecology, vol.52, issue.2, pp.21-31, 2010.
DOI : 10.1111/j.1365-294X.2009.04480.x
URL : https://hal.archives-ouvertes.fr/hal-00497208
, Biology and Ecology of Radiolaria, pp.179-222, 2015.
DOI : 10.1007/978-4-431-55130-0_8
, The quantitative distribution of Sticholonche zanclea in the western part of the East China Sea, Oceanologica et Limnologia Sinica, vol.9, p.59, 1978.
, Inter-annual fluctuations of zooplankton communities in the Bay of Villefranche-sur-mer from 1995 to 2005 (Northern Ligurian Sea, France), Biogeosciences, vol.8, issue.11, pp.3143-3158, 1995.
DOI : 10.5194/bg-8-3143-2011
, ggplot2: Elegant Graphics for Data Analysis, 2009.
, MAREDAT: towards a world atlas of MARine Ecosystem DATa, Earth System Science Data, vol.5, issue.2, pp.227-239, 2013.
DOI : 10.5194/essd-5-227-2013
URL : https://hal.archives-ouvertes.fr/hal-00997771
, Ocean's least productive waters are expanding, Geophysical Research Letters, vol.18, issue.3, 2008.
DOI : 10.1029/2007GL031745
, Zooplankton: Pivotal role in the control of ocean production, ICES Journal of Marine Science, vol.52, issue.3-4, pp.265-277, 1995.
DOI : 10.1016/1054-3139(95)80043-3
, Zooplankton fecal pellet flux in the abyssal northeast Pacific: A 15 year time-series study, Limnology and Oceanography, vol.58, issue.3, pp.881-892, 2013.
DOI : 10.4319/lo.2013.58.3.0881
, Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models, Global Change Biology, vol.1, issue.0, pp.2016-2040, 2005.
DOI : 10.1038/35088063
, Rhizaria, Current Biology, vol.24, issue.3, pp.103-107025, 2014.
DOI : 10.1016/j.cub.2013.12.025
, Acquired phototrophy in aquatic protists, Aquatic Microbial Ecology, vol.57, pp.279-310, 2009.
DOI : 10.3354/ame01340
URL : https://hal.archives-ouvertes.fr/hal-01258262
, Radiolaria: Major exporters of organic carbon to the deep ocean, Global Biogeochemical Cycles, vol.46, issue.6, 1010.
DOI : 10.1029/2008GB003221
, Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre, Frontiers in Microbiology, vol.114, issue.38, p.469, 2015.
DOI : 10.1016/j.marchem.2009.03.002
, Eukaryotic plankton diversity in the sunlit ocean, Science, vol.348, issue.6237, p.1261605, 2015.
DOI : 10.1126/science.1261605
, Determinants of community structure in the global plankton interactome, Science, vol.348, issue.6237, p.1262073, 2015.
DOI : 10.1126/science.1262073
URL : https://hal.archives-ouvertes.fr/hal-01234200
, Environmental characteristics of Agulhas rings affect interocean plankton transport, Science, vol.348, issue.6237, p.1261447, 2015.
DOI : 10.1126/science.1261447
URL : https://hal.archives-ouvertes.fr/hal-01218499
, Plankton community and gene networks associated with carbon export in the global ocean
, Video plankton recorder reveals high abundances of colonial Radiolaria in surface waters of the central North Pacific, Journal of Plankton Research, vol.24, issue.8, pp.797-805, 2002.
DOI : 10.1093/plankt/24.8.797
, What you see is not what you catch: a comparison of concurrently collected net, Optical Plankton Counter, and Shadowed Image Particle Profiling Evaluation Recorder data from the northeast Gulf of Mexico, Deep Sea Research Part I: Oceanographic Research Papers, vol.51, issue.1, pp.129-151, 2004.
DOI : 10.1016/j.dsr.2003.09.008
, Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler, ICES Journal of Marine Science, vol.65, issue.3, pp.433-442, 2008.
DOI : 10.1093/icesjms/fsn010
, Thanks to Jean-Olivier Irisson for valuable help with the R language and Ian Probert for insightful comments and English proof reading. Funding: DESIR project Emergence-UPMC from
, Digital zooplankton image analysis using the ZooScan integrated system, Journal of Plankton Research, vol.32, issue.3, pp.285-303, 2010.
DOI : 10.1093/plankt/fbp124
, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2014.
, ggplot2: Elegant Graphics for Data Analysis, 2009.
, Predicting marine phytoplankton maximum growth rates from temperature: Improving on the Eppley curve using quantile regression, Limnology and Oceanography, vol.53, issue.2, pp.487-493, 2008.
DOI : 10.4319/lo.2008.53.2.0487
, Examining the consistency of products derived from various ocean color sensors in open ocean (Case 1) waters in the perspective of a multi-sensor approach, Remote Sensing of Environment, vol.111, issue.1, pp.69-88, 2007.
DOI : 10.1016/j.rse.2007.03.012
, (Brady), studied with microelectrodes1, Limnology and Oceanography, vol.30, issue.6, pp.1253-1267, 1985.
DOI : 10.4319/lo.1985.30.6.1253
, Mathematical formulation of the relationship between photosynthesis and light for phytoplankton, Limnology and Oceanography, vol.21, issue.4, pp.540-547, 1976.
DOI : 10.4319/lo.1976.21.4.0540
, Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components, Science, vol.281, issue.5374, pp.237-240, 1998.
DOI : 10.1126/science.281.5374.237
, Small Phytoplankton and Carbon Export from the Surface Ocean, Science, vol.315, issue.5813, pp.838-840, 2007.
DOI : 10.1126/science.1133471
, Planktonic sarcodines (Acantharia, Radiolaria, Foraminifera) in surface waters near Bermuda: abundance, biomass and vertical flux, Journal of Plankton Research, vol.17, issue.1, pp.131-163, 1995.
DOI : 10.1093/plankt/17.1.131
, in The ecology of the plankton off La Jolla, California, in the period, pp.67-87, 1967.
, Tara Oceans Data: A sampling strategy and methodology for the study of marine plankton in their environmental context. Sci. Data 2, 150023, 2015.
, La division nucl??aire chez les Acanthaires, Journal of Ultrastructure Research, vol.60, issue.3, pp.279-295, 1977.
DOI : 10.1016/S0022-5320(77)80014-2
, Marine Plankton Food Chains, Annual Review of Ecology and Systematics, vol.19, issue.1, 1988.
DOI : 10.1146/annurev.es.19.110188.000315
, Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components, Science, vol.281, issue.5374, pp.281-237, 1998.
DOI : 10.1126/science.281.5374.237
, Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre, Frontiers in Microbiology, vol.114, issue.38, p.469, 2015.
DOI : 10.1016/j.marchem.2009.03.002
, High-resolution observations of plankton spatial distributions correlated with hydrography in the Great South Channel, Georges Bank. Deep Sea Research Part II: Tropical Studies in Oceanography, pp.7-8, 1996.
, The radiolaria, E. R. Lankester, éd. A Treatise on Zoology, 1909.
, Global patterns in biodiversity, Nature, vol.405, issue.6783, pp.220-227, 2000.
DOI : 10.1038/35012228
, Molecular phylogeny of symbiotic dinoflagellates from planktonic foraminifera and radiolaria, Molecular Biology and Evolution, vol.13, issue.9, pp.1192-1197, 1996.
DOI : 10.1093/oxfordjournals.molbev.a025684
, Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR, Applied and Environmental Microbiology, vol.74, issue.23, pp.74-7174, 2008.
DOI : 10.1128/AEM.01298-08
, Foraminifera: A biological overview, Modern Foraminifera, 2003.
DOI : 10.1007/0-306-48104-9_3
, Fine-scale planktonic habitat partitioning at a shelf-slope front revealed by a high-resolution imaging system, Journal of Marine Systems, vol.142, pp.111-125, 2015.
DOI : 10.1016/j.jmarsys.2014.10.008
, Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre?, Journal of Geophysical Research: Biogeosciences, vol.71, issue.11, pp.117-02024, 2012.
DOI : 10.1128/AEM.71.11.7053-7063.2005
, Die Radiolarien (Rhizopoda radiaria) : eine Monographie, 1862.
DOI : 10.5962/bhl.title.10155
, OCEAN CLIMATE CHANGE, PHYTOPLANKTON COMMUNITY RESPONSES, AND HARMFUL ALGAL BLOOMS: A FORMIDABLE PREDICTIVE CHALLENGE, Journal of Phycology, vol.187, issue.Suppl. 1, pp.220-235, 2010.
DOI : 10.1111/j.1529-8817.2010.00815.x
, A Global Map of Human Impact on Marine Ecosystems, Science, vol.319, issue.5865, pp.319-948, 2008.
DOI : 10.1126/science.1149345
, Armor: Why, When and How Evolution of primary producers in the sea, pp.311-332, 2007.
, Late Neogene-Quaternary radiolarian biostratigraphy: a brief review, Journal of Micropalaeontology, vol.23, issue.1, pp.39-47, 2004.
DOI : 10.1144/jm.23.1.39
, Climate change and marine plankton, Trends in Ecology & Evolution, vol.20, issue.6, pp.337-344, 2005.
DOI : 10.1016/j.tree.2005.03.004
, Biological identifications through DNA barcodes, Proceedings of the Royal Society B: Biological Sciences, vol.270, issue.1512, pp.313-321, 2003.
DOI : 10.1098/rspb.2002.2218
, Macroecology of Calanus finmarchicus and C. helgolandicus in the North Atlantic Ocean and adjacent seas, Marine Ecology Progress Series, vol.345, pp.147-165, 2007.
DOI : 10.3354/meps06775
, On the Generality of the Latitudinal Diversity Gradient, The American Naturalist, vol.163, issue.2, pp.192-211, 2004.
DOI : 10.1086/381004
, Contribution à l'étude biologique des Sphaerocollides (Radiolaires Collodaires et Radiolaires polycyttaires) et de leurs parasites, Annales des Sciences Naturelles Zoologie, vol.15, pp.99-183, 1953.
, The Molecular Clock and Estimating Species Divergence, Nature Education, vol.1, pp.1-3, 2008.
, Species Dynamics in Phytoplankton Blooms: Incomplete Mixing and Competition for Light, The American Naturalist, vol.154, issue.1, 1999.
DOI : 10.2307/2463742
, Zur Entwicklungsgeschichte der Thalassicollen, Archiv für Protistenkunde, vol.30, pp.1-124, 1913.
, Global biodiversity patterns of marine phytoplankton and zooplankton, Nature, vol.39, issue.6994, pp.429-863, 2004.
DOI : 10.1038/nature00830
, Phylogenetic Relationships and Evolutionary Patterns of the Order Collodaria (Radiolaria), PLoS ONE, vol.441, issue.1574, p.35775, 2012.
DOI : 10.1371/journal.pone.0035775.s002
URL : https://hal.archives-ouvertes.fr/hal-01258233
, What you see is not what you catch: a comparison of concurrently collected net, Optical Plankton Counter, and Shadowed Image Particle Profiling Evaluation Recorder data from the northeast Gulf of Mexico. Deep Sea Research Part I: Oceanographic Research Papers, pp.129-151, 2004.
, Future climate-driven shifts in distribution of Calanus finmarchicus, Global Change Biology, vol.68, issue.2, pp.756-766, 2011.
DOI : 10.1111/j.1365-2486.2010.02310.x
, In hot water: zooplankton and climate change, ICES Journal of Marine Science, vol.65, issue.3, pp.279-295, 2008.
DOI : 10.1093/icesjms/fsn028
, Deep pelagic biology, Journal of Experimental Marine Biology and Ecology, vol.300, issue.1-2, pp.253-272, 2004.
DOI : 10.1016/j.jembe.2004.01.012
, Conservation of Deep Pelagic Biodiversity, Conservation Biology, vol.314, issue.4, pp.847-858, 2009.
DOI : 10.1111/j.1523-1739.2009.01219.x
, Global latitudinal variations in marine copepod diversity and environmental factors, Proceedings of the Royal Society B: Biological Sciences, vol.41, issue.5739, pp.276-3053, 1670.
DOI : 10.1126/science.1113399
URL : https://hal.archives-ouvertes.fr/hal-00480741
, A system for high-resolution zooplankton imaging, IEEE Journal of Oceanic Engineering, vol.26, issue.4, pp.671-676, 2001.
DOI : 10.1109/48.972110
, Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic, PLOS ONE, vol.9, issue.1978???2012, p.131258, 2015.
DOI : 10.1371/journal.pone.0131258.s003
URL : https://hal.archives-ouvertes.fr/hal-01308142
, Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats, Environmental Microbiology, vol.58, issue.11, pp.12-2946, 2010.
DOI : 10.1111/j.1462-2920.2010.02272.x
URL : https://hal.archives-ouvertes.fr/hal-01254021
, Imaging of plankton specimens with the lightframe on-sight keyspecies investigation (LOKI) system, Journal of the European Optical Society: Rapid Publications, vol.5, issue.0, 2010.
DOI : 10.2971/jeos.2010.10017s
, Scale evolution, sequence phylogeny, and taxonomy of thaumatomonad Cercozoa: 11 new species and new genera Scutellomonas, Cowlomonas, Thaumatospina and Ovaloplaca, European Journal of Protistology, vol.50, issue.3, pp.270-313, 2014.
DOI : 10.1016/j.ejop.2013.12.005
, THE SIZE DISTRIBUTION OF PARTICLES IN THE OCEAN1, Limnology and Oceanography, vol.17, issue.3, pp.327-340, 1972.
DOI : 10.4319/lo.1972.17.3.0327
, Sea Microbes, 1979.
, Deep relationships of Rhizaria revealed by phylogenomics: A farewell to Haeckel???s Radiolaria, Molecular Phylogenetics and Evolution, vol.67, issue.1, pp.53-59, 2013.
DOI : 10.1016/j.ympev.2012.12.011
, Microbial diversity in the deep sea and the underexplored "rare biosphere", Proceedings of the National Academy of Sciences, pp.12115-12120, 2006.
DOI : 10.1073/pnas.0605127103
, Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler, ICES Journal of Marine Science, vol.65, issue.3, pp.65-433, 2008.
DOI : 10.1093/icesjms/fsn010
, Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker, PLoS ONE, vol.7, issue.8, p.42780, 2012.
DOI : 10.1371/journal.pone.0042780.s007
URL : https://hal.archives-ouvertes.fr/hal-01254003
, Acquired phototrophy in aquatic protists, Aquatic Microbial Ecology, vol.57, pp.279-310, 2009.
DOI : 10.3354/ame01340
URL : https://hal.archives-ouvertes.fr/hal-01258262
, Colonial spumellarian radiolarians of the world ocean. Academy of Sciences, USSR, Explorations of the fauna of the seas, pp.295-418, 1971.
, Estimation of global zooplankton biomass from satellite ocean colour, Journal of Marine Systems, vol.78, issue.1, pp.18-27, 2009.
DOI : 10.1016/j.jmarsys.2009.02.004
, Pseudopodial features and feeding behavior of living nassellarians Eucyrtidium hexagonatum Haeckel, Pterocorys zancleus (M??ler) and Dictyocodon prometheus Haeckel, Paleontological Research, vol.12, issue.3, pp.209-222, 2008.
DOI : 10.2517/1342-8144-12.3.209
, Distribution patterns of the radiolarian nuclei and symbionts using DAPI-fluorescence, Bull Natl Mus Nat Sci, pp.169-182, 2009.
, Radiolaria: achievements and unresolved issues: taxonomy and cytology, Plankton and Benthos Research, vol.6, issue.2, pp.69-91, 2011.
DOI : 10.3800/pbr.6.69
, Biology and Ecology of Radiolaria, S. Ohtsuka et al., éd. Marine Protists, 2015.
DOI : 10.1007/978-4-431-55130-0_8
, Oldest Fossil Records of Marine Protists and the Geologic History Toward the Establishment of the Modern-Type Marine Protist World, S. Ohtsuka et al., éd. Marine Protists, 2015.
DOI : 10.1007/978-4-431-55130-0_15
, The feeding behavior of Beroe ovata, Marine Biology, vol.11, issue.7, pp.69-76, 1974.
DOI : 10.1007/BF00402849
, The ecology of colonial radiolarians: their colony morphology, trophic interactions and associations, behavior, distribution, and the photosynthesis of their symbionts, Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 1979.
DOI : 10.1575/1912/2214
, The ecology of Collozoum longiforme, sp. nov., a new colonial radiolarian from the equatorial Atlantic Ocean, Deep Sea Research Part A. Oceanographic Research Papers, pp.715-732, 1979.
DOI : 10.1016/0198-0149(80)90024-2
, Collozoum caudatum sp. nov.: A giant colonial radiolarian from equatorial and Gulf Stream waters. Deep Sea Research Part A. Oceanographic Research Papers, pp.1033-1047, 1981.
, The nutrition of radiolarians: Trophic activity of some solitary Spumellaria1, Limnology and Oceanography, vol.30, issue.3, pp.646-652, 1985.
DOI : 10.4319/lo.1985.30.3.0646
, The biology of Physematium muelleri: trophic activity. Deep Sea Research Part A. Oceanographic Research Papers, pp.33-913, 1986.
, Genetic diversity of small eukaryotes from the coastal waters of Nansha Islands in China, FEMS Microbiology Letters, vol.240, issue.2, pp.163-170, 2004.
DOI : 10.1016/j.femsle.2004.09.030
, Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida, European Journal of Protistology, vol.41, issue.4, pp.287-298, 2005.
DOI : 10.1016/j.ejop.2005.06.001
, Ultrastructural and molecular characterization of cyanobacterial symbionts in Dictyocoryne profunda (polycystine radiolaria), Symbiosis, vol.22, issue.1882, pp.51-55, 2012.
DOI : 10.1007/s13199-012-0174-2
, Phylogenetic relationships between the Acantharea and the Polycystinea: A molecular perspective on Haeckel's Radiolaria, Proceedings of the National Academy of Sciences, vol.94, issue.21, pp.94-11411, 1997.
DOI : 10.1073/pnas.94.21.11411
, Insights on the Diversity within a "Species" of Thalassicolla (Spumellarida) Based on 16S-like Ribosomal RNA Gene Sequencing, The Journal of Eukaryotic Microbiology, vol.51, issue.5, pp.45-488, 1998.
DOI : 10.1126/science.2448875
, Towards a molecular phylogeny of colonial spumellarian radiolaria, Marine Micropaleontology, vol.36, issue.2-3, pp.67-79, 1999.
DOI : 10.1016/S0377-8398(98)00028-0
, Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene, FEMS Microbiology Ecology, vol.52, issue.1, pp.79-92, 2005.
DOI : 10.1016/j.femsec.2004.10.006
, ) -Morpho-molecular classification of the Collodaria: Toward an integrative taxonomy? Travel Grant, p.290, 2015.
, ) -Eco-exploration marine participative, 2013.
, We did a ring net tow (330 µm mesh size) per cycle to sort single specimens of interests, image them for morphologic identification and preserved them in ethanol for single-cell molecular Ultrastructure of a colonial radiolarian Collozoum inerme and a cytochemical determination of the role of its zooxanthellae, Tissue Cell, vol.8, pp.195-208, 1976.
, Assimilation of symbiont-derived photosynthates in some solitary and colonial radiolaria, Marine Biology, vol.177, issue.3, pp.265-274, 1983.
DOI : 10.1007/BF00395815
, SCRIPPSIELLA VELELLAE SP. NOV. (PERIDINIALES) AND GLOEOKINIUM VISCUM SP. NOV. (PHYTODINIALES), DINOFLAGELLATE SYMBIONTS OF TWO HYDROZOANS (CNIDIARIA)1,2, Journal of Phycology, vol.42, issue.4, pp.517-545, 1993.
DOI : 10.1111/j.1529-8817.1993.tb00153.x
, Nomenclature of Endosymbiotic Dinoflagellates, Taxon, vol.35, issue.2, pp.286-94, 1986.
DOI : 10.2307/1221270
, World atlas of distribution of recent polycystina (Radiolaria), 2010.
, 1881. ? Uber das Zusammenleben von Thieren und Algen, Verh. Physiol. Ges. Berlin, pp.1881-188222
, ? Uber die morphologische und physiologische Bedeutung des Chlorophylls bei Thieren. Archiv f ? ur Anatomie und, Physiologie Leipzig, vol.1882, pp.125-51, 1882.
, Radiolaria Associated with Large Diversity of Marine Alveolates, Protist, vol.163, issue.5, pp.767-77, 2012.
DOI : 10.1016/j.protis.2012.04.004
, Symbiosis and mixotrophy among pelagic microorganisms, Microbial Ecology of the Oceans, pp.495-523, 2000.
, Genetic Diversity of Symbiotic Dinoflagellates in the Genus Symbiodinium, Protist, vol.156, issue.1, pp.19-34, 2005.
DOI : 10.1016/j.protis.2005.02.004
, A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera (d???Orbigny), Marine Micropaleontology, vol.45, issue.2, pp.101-117, 2002.
DOI : 10.1016/S0377-8398(02)00037-3
, New perspectives on the functioning and evolution of photosymbiosis in plankton, Communicative & Integrative Biology, vol.10, issue.4, p.24560, 2013.
DOI : 10.3732/ajb.0800258
URL : https://hal.archives-ouvertes.fr/hal-01258228
, An original mode of symbiosis in open ocean plankton, Proc. Natl. Acad, 2012.
DOI : 10.1073/pnas.1212303109
URL : https://hal.archives-ouvertes.fr/hal-01258241
, Multiple microalgal partners in symbiosis with the acantharian Acanthochiasma sp. (Radiolaria), Symbiosis, vol.10, issue.1, pp.233-277, 2012.
DOI : 10.1007/s13199-012-0195-x
URL : https://hal.archives-ouvertes.fr/hal-01258243
, THE RELATION OF DIEL PATTERNS OF CELL DIVISION TO DIEL PATTERNS OF MOTILITY IN THE SYMBIOTIC DINOFLAGELLATE SYMBIODINIUM MICROADRIA TICUM FREUDENTHAL IN CULTURE, New Phytologist, vol.6, issue.3, pp.421-453, 1983.
DOI : 10.1146/annurev.pp.30.060179.002413
, sp. nov., a Zooxanthella: Taxonomy, Life Cycle, and Morphology.*, The Journal of Protozoology, vol.6, issue.Supp., pp.45-52, 1962.
DOI : 10.1111/j.1550-7408.1962.tb02579.x
, Molecular Phylogeny of a Potentially Parasitic Dinoflagellate Isolated from the Solitary Radiolarian, Thalassicolla nucleata, The Journal of Eukaryotic Microbiology, vol.10, issue.1, pp.43-48, 2006.
DOI : 10.1016/j.ejop.2003.11.003
, Molecular phylogeny of symbiotic dinoflagellates from planktonic foraminifera and radiolaria, Molecular Biology and Evolution, vol.13, issue.9, pp.1192-1199, 1996.
DOI : 10.1093/oxfordjournals.molbev.a025684
, Photosymbiotic associations in planktonic foraminifera and radiolaria, Hydrobiologia, vol.461, issue.1/3, pp.1-7, 2001.
DOI : 10.1023/A:1012710909023
, Molecular phylogeny of the dinoflagellates Podolampas and Blepharocysta (Peridiniales, Dinophyceae), Phycologia, vol.49, pp.212-232, 2010.
, New home for tiny symbionts: Dinophytes determined as Zooxanthella are Peridiniales and distantly related to Symbiodinium, Molecular Phylogenetics and Evolution, vol.67, issue.1, pp.217-239, 2013.
DOI : 10.1016/j.ympev.2013.01.003
, SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-225, 2010.
DOI : 10.1093/molbev/msp259
URL : https://hal.archives-ouvertes.fr/lirmm-00705187
, Coral Reefs Under Rapid Climate Change and Ocean Acidification, Science, vol.318, issue.5857, pp.1737-1779, 2007.
DOI : 10.1126/science.1152509
, Les Xanthelles des Radiolaires Sphaerocollides, des Acanthaires et de Velella velella: infrastructure -cytochimie -taxonomie, Protistologica, vol.10, pp.573-601, 1974.
, sp. nov. (Dinophyceae) with special reference to its endosymbiotic alga, European Journal of Phycology, vol.23, issue.4, pp.237-282, 1994.
DOI : 10.1126/science.227.4683.192
, Endodinium chattoni (nov. gen. et sp.) Son cycle de multiplication endog ene. Variation du nombre de ses chromosomes, Compte Rendu Hebdomadaire des S eances de l'Acad emie des Sciences, pp.845-851, 1922.
, Zooxanthella chattonii, 1924.
, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, vol.17, issue.8, pp.754-759, 2001.
DOI : 10.1093/bioinformatics/17.8.754
, The Complete Plastid Genomes of the Two ???Dinotoms??? Durinskia baltica and Kryptoperidinium foliaceum, PLoS ONE, vol.24, issue.5, p.10711, 2011.
DOI : 10.1371/journal.pone.0010711.s003
, MEDIA FOR THE CULTURE OF OCEANIC ULTRAPHYTOPLANKTON1,2, Journal of Phycology, vol.42, issue.4, pp.633-641, 1987.
DOI : 10.1111/j.1529-8817.1987.tb04217.x
, Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping, PLoS ONE, vol.3, issue.12, p.29013, 2011.
DOI : 10.1371/journal.pone.0029013.s002
, Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations, FEMS Microbiology Ecology, vol.76, issue.3, pp.513-536, 2011.
DOI : 10.1111/j.1574-6941.2011.01072.x
URL : https://hal.archives-ouvertes.fr/hal-00848702
, A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai???i, Molecular Phylogenetics and Evolution, vol.56, issue.1, pp.492-499, 2010.
DOI : 10.1016/j.ympev.2010.03.040
, FigTree 1.3.1, 2010.
, Pelagodinium gen. nov. and P. b??ii comb. nov., a Dinoflagellate Symbiont of Planktonic Foraminifera, Protist, vol.161, issue.3, pp.385-99, 2010.
DOI : 10.1016/j.protis.2010.01.002
URL : https://hal.archives-ouvertes.fr/hal-01258255
, Variation in Symbiodinium ITS2 Sequence Assemblages
among Coral Colonies, Variation in Symbiodinium ITS2 sequence assemblages among coral colonies, p.15854, 2011.
DOI : 10.1371/journal.pone.0015854.s001
, Symbiont acquisition strategy drives host???symbiont associations in the southern Great Barrier Reef, Coral Reefs, vol.51, issue.4, pp.763-72, 2008.
DOI : 10.1007/s00338-008-0412-5
, GEN. ET SP. NOV. (DINOPHYCEAE), A SMALL LIGHTLY ARMORED DINOFLAGELLATE IN THE PFIESTERIACEAE, Journal of Phycology, vol.38, issue.4, pp.951-61, 2006.
DOI : 10.1111/j.1529-8817.2006.00248.x
, Acquired phototrophy in aquatic protists, Aquatic Microbial Ecology, vol.57, pp.279-310, 2009.
DOI : 10.3354/ame01340
URL : https://hal.archives-ouvertes.fr/hal-01258262
, MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.28, issue.10, pp.2731-2740, 2011.
DOI : 10.1093/molbev/msr121
, Ultrastructure of the ???Zooxanthella??? Endodinium Chattonii in Situ*, Journal of the Marine Biological Association of the United Kingdom, vol.4, issue.01, pp.227-261, 1971.
DOI : 10.1080/00071616600650011
, VALIDATION OF SOME CURRENTLY USED INVALID NAMES OF DINOFLAGELLATES, Journal of Phycology, vol.36, issue.5, p.972, 2000.
DOI : 10.1046/j.1529-8817.2000.03656.x
, SYMBIODINIUM MICROADRIATICUM FREUDENTHAL, S. GOREAUII SP. NOV., S. KAWAGUTII SP. NOV. AND S. PILOSUM SP. NOV.: GYMNODINIOID DINOFLAGELLATE SYMBIONTS OF MARINE INVERTEBRATES, Journal of Phycology, vol.3, issue.3, pp.469-81, 1987.
DOI : 10.1007/BF01611382
, Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida, Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida, pp.287-98, 2005.
DOI : 10.1016/j.ejop.2005.06.001