$. Chebidrug-<http, Listing 10.6: LS6 FedBench query SELECT ?drug ?title WHERE { ?drug <http://www4.wiwiss.fuberlin.de/drugbank/resource/drugbank/drugCategory> <http://www4.wiwiss.fuberlin.de/drugbank/resource/drugcategory/micronutrient> . ?drug <http

N. Abdallah, F. Goasdoué, and M. Rousset, Dl-liter in the light of propositional logic for decentralized data management, Proceedings of the 21st international jont conference on Artifical intelligence, IJCAI'09, pp.2010-2015, 2009.
URL : https://hal.archives-ouvertes.fr/inria-00429710

S. Abiteboul, É. Antoine, and J. Stoyanovich, Viewing the Web as a Distributed Knowledge Base, 2012 IEEE 28th International Conference on Data Engineering
DOI : 10.1109/ICDE.2012.150
URL : https://hal.archives-ouvertes.fr/hal-00703210

J. Abraham, P. Brazier, A. Chebotko, J. Navarro, and A. Piazza, Distributed Storage and Querying Techniques for a Semantic Web of Scientific Workflow Provenance, 2010 IEEE International Conference on Services Computing, pp.178-185, 2010.
DOI : 10.1109/SCC.2010.14

R. L. Ackoff, From data to wisdom, Journal of Applied Systems Analysis, vol.16, 1989.

K. Alexander, R. Cyganiak, M. Hausenblas, and J. Zhao, Describing Linked Datasets - On the Design and Usage of voiD, the 'Vocabulary of Interlinked Datasets, WWW 2009 Workshop: Linked Data on the Web (LDOW2009), pp.41-43, 2009.

R. Alfieri, R. Cecchini, V. Ciaschini, L. Dell-'agnello, Á. Frohner et al., VOMS, an Authorization System for Virtual Organizations, European Across Grids Conference, pp.33-40, 2003.
DOI : 10.1007/978-3-540-24689-3_5

I. Altintas, C. Berkley, E. Jaeger, M. Jones, B. Ludascher et al., Kepler: an extensible system for design and execution of scientific workflows, Proceedings. 16th International Conference on Scientific and Statistical Database Management, 2004., pp.423-424, 2004.
DOI : 10.1109/SSDM.2004.1311241

A. Anjum, N. Bessis, R. Hill, R. Mcclatchey, I. Habib et al., Provenance Management for Neuroimaging Workflows in neuGrid, 2011 International Conference on P2P, Parallel, Grid, Cloud and Internet Computing, pp.67-74
DOI : 10.1109/3PGCIC.2011.20

A. Ankolekar, D. Martin, D. Mcguinness, S. Mcilraith, M. Paolucci et al., OWL- S' Relationship to Selected Other Technologies [http://www.w3.org/submission/owl- s-related], 2004.

M. Antonioletti, N. P. Hong, A. C. Hume, M. Jackson, K. Karasavvas et al., Ogsa-dai 3.0 -the what's and whys, UK e-Science All Hands Meeting, p.49, 2007.

C. B. Aranda, M. Arenas, and Ó. Corcho, Semantics and optimization of the sparql 1.1 federation extension, In ESWC, issue.2, pp.1-15, 0200.

A. Arbona, Fura, a self-contained grid middleware, sourceforge.net, 2009.

N. Ashish, J. Ambite, M. Muslea, and J. Turner, Neuroscience Data Integration through Mediation: An (F)BIRN Case Study, Frontiers in Neuroinformatics, vol.4, pp.12-49, 2010.
DOI : 10.3389/fninf.2010.00118

F. Baader and W. Nutt, Basic Description Logics, pp.43-95, 2003.
DOI : 10.1017/CBO9780511711787.004
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.11.222

R. G. Baraniuk, More Is Less: Signal Processing and the Data Deluge, Science, vol.331, issue.6018, pp.331-717
DOI : 10.1126/science.1197448

A. Basse, F. Gandon, I. Mirbel, and M. Lo, Dfs-based frequent graph pattern extraction to characterize the content of rdf triple stores, p.99, 0201.
URL : https://hal.archives-ouvertes.fr/hal-01170896

M. Bastian, S. Heymann, and M. Jacomy, Gephi: An open source software for exploring and manipulating networks, p.154, 2009.

E. Beisswanger, S. Schulz, H. Stenzhorn, and U. Hahn, Biotop: An upper domain ontology for the life sciences: A description of its current structure, contents and interfaces to obo ontologies, Appl. Ontol, vol.3, issue.4, pp.205-212, 2008.

K. Belhajjame, S. M. Embury, N. W. Paton, R. Stevens, and C. A. Goble, Automatic annotation of web services based on workflow definitions, TWEB, vol.2, issue.2, p.2008

K. Belhajjame, K. Wolstencroft, O. Corcho, T. Oinn, F. Tanoh et al., Metadata Management in the Taverna Workflow System, 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), 2008.
DOI : 10.1109/CCGRID.2008.17

G. Bell, T. Hey, and A. Szalay, COMPUTER SCIENCE: Beyond the Data Deluge, Science, vol.323, issue.5919, pp.1297-1298, 2009.
DOI : 10.1126/science.1170411

A. Benabdelkader, M. Santcroos, S. Madougou, A. H. Van-kampen, and S. D. Olabarriaga, A Provenance Approach to Trace Scientific Experiments on a Grid Infrastructure, 2011 IEEE Seventh International Conference on eScience, pp.134-141, 2011.
DOI : 10.1109/eScience.2011.27

S. Benkner, A. Arbona, G. Berti, A. Chiarini, R. Dunlop et al., &#x0040;neurIST: Infrastructure for Advanced Disease Management Through Integration of Heterogeneous Data, Computing, and Complex Processing Services, IEEE Transactions on Information Technology in Biomedicine, vol.14, issue.6, pp.1365-1377
DOI : 10.1109/TITB.2010.2049268

T. Berners-lee, R. Cailliau, A. Luotonen, H. F. Nielsen, and A. Secret, The World-Wide Web, Communications of the ACM, vol.37, issue.8, pp.76-82, 1994.
DOI : 10.1145/179606.179671

T. Berners-lee, J. Hendler, and L. Ora, The Semantic Web, Scientific American, vol.284, issue.5, 2001.
DOI : 10.1038/scientificamerican0501-34

J. Bhagat, F. Tanoh, E. Nzuobontane, T. Laurent, J. Orlowski et al., BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic acids research, Article in press, 2010.

C. Bizer and A. Schultz, The berlin sparql benchmark, International Journal On Semantic Web and Information Systems, vol.162, p.39, 2009.

C. Bizer and A. Seaborne, D2RQ -treating non-RDF databases as virtual RDF graphs, ISWC2004 (posters), 2004.

C. Bizer, T. Heath, and T. Berners-lee, Linked Data - The Story So Far, International Journal on Semantic Web and Information Systems, vol.5, issue.3, pp.1-22, 2009.
DOI : 10.4018/jswis.2009081901

C. Bizer, J. Lehmann, G. Kobilarov, S. Auer, C. Becker et al., DBpedia - A crystallization point for the Web of Data, Web Semantics: Science, Services and Agents on the World Wide Web, vol.7, issue.3, pp.154-165, 2009.
DOI : 10.1016/j.websem.2009.07.002

I. Blanquer, V. Hernandez, D. Segrelles, and E. Torres, Enhancing Privacy and Authorization Control Scalability in the Grid Through Ontologies, IEEE Transactions on Information Technology in Biomedicine, vol.13, issue.1, pp.16-24, 2008.
DOI : 10.1109/TITB.2008.2003369

M. Boeker, H. Stenzhorn, K. Kumpf, P. Bijlenga, S. Schulz et al., The @neurist ontology of intracranial aneurysms: providing terminological services for an integrated it infrastructure, AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium, pp.56-60, 2007.

R. Bolze, F. Cappello, E. Caron, M. Dayde, F. Desprez et al., Grid'5000: A Large Scale And Highly Reconfigurable Experimental Grid Testbed, International Journal of High Performance Computing Applications, vol.20, issue.4, pp.481-494, 2006.
DOI : 10.1177/1094342006070078
URL : https://hal.archives-ouvertes.fr/hal-00684943

A. Boukottaya and C. Vanoirbeek, Schema matching for transforming structured documents, Proceedings of the 2005 ACM symposium on Document engineering , DocEng '05, pp.101-110, 2005.
DOI : 10.1145/1096601.1096629
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.490.3470

S. Bowers, Scientific Workflow, Provenance, and Data Modeling Challenges and Approaches, Journal on Data Semantics, vol.3, issue.3, pp.19-30
DOI : 10.1007/s13740-012-0004-y

V. Breton, K. Dean, T. Solomonides, I. Blanquer, V. Hernandez et al., The healthgrid white paper, Studies in health technology and informatics, vol.112, pp.249-321, 2005.
URL : https://hal.archives-ouvertes.fr/in2p3-00024024

J. Broekstra, A. Kampman, and F. V. Harmelen, Sesame: A generic architecture for storing and querying rdf and rdf schema, pp.54-68, 2002.

G. Brumfiel, High-energy physics: Down the petabyte highway, Nature, vol.469, issue.7330, pp.469282-283, 2011.
DOI : 10.1038/469282a

A. Bucur, S. Ruping, T. Sengstag, S. Sfakianakis, M. Tsiknakis et al., The ACGT project in retrospect: Lessons learned and future outlook, S1877050911001773. <ce:title>Proceedings of the International Conference on Computational Science, pp.1119-1128, 2011.
DOI : 10.1016/j.procs.2011.04.119

C. Aranda and Ó. C. García, Federating queries to rdf repositories, 2010.

D. Calvanese, G. De-giacomo, D. Lembo, M. Lenzerini, and R. Rosati, Tractable Reasoning and Efficient Query Answering in Description Logics: The DL-Lite Family, Journal of Automated Reasoning, vol.104, issue.1,2, pp.385-429, 2007.
DOI : 10.1007/s10817-007-9078-x

N. Capit, G. Da-costa, Y. Georgiou, G. Huard, C. Martin et al., A batch scheduler with high level components, CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005., pp.776-783
DOI : 10.1109/CCGRID.2005.1558641
URL : https://hal.archives-ouvertes.fr/hal-00005106

J. Cardoso, J. Miller, and S. Emani, Web Services Discovery Utilizing Semantically Annotated WSDL Reasoning Web, pp.240-268, 2008.
DOI : 10.1007/978-3-540-85658-0_7
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.219.2114

N. Cerezo and J. Montagnat, Scientific Workflow Reuse through Conceptual Workflows, 6th Workshop on Workflows in Support of Large-Scale Science, p.122, 0203.
DOI : 10.1145/2110497.2110499
URL : https://hal.archives-ouvertes.fr/hal-00677831

D. W. Chadwick, G. Zhao, S. Otenko, R. Laborde, L. Su et al., Permis: a modular authorization infrastructure. Concurrency and Computation: Practice and Experience, pp.1341-1357, 2008.

A. Chebotko, S. Lu, X. Fei, and F. Fotouhi, RDFProv: A relational RDF store for querying and managing scientific workflow provenance, Data & Knowledge Engineering, vol.69, issue.8, pp.836-865, 2010.
DOI : 10.1016/j.datak.2010.03.005

E. Christensen, F. Curbera, G. Meredith, and S. Weerawarana, Web Services Description Language (WSDL) 1.1 [http://www.w3, 2001.

O. Corby and C. Faron-zucker, The kgram abstract machine for knowledge graph querying. Web Intelligence and Intelligent Agent Technology, International Conference on, vol.1, pp.338-341, 2010.

O. Corby, R. Dieng-kuntz, and C. Faron-zucker, Querying the semantic web with corese search engine, ECAI, pp.705-709, 2004.

O. Corby, A. Gaignard, C. Faron-zucker, and J. Montagnat, KGRAM Versatile Inference and Query Engine for the Web of Linked Data, 2012 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology
DOI : 10.1109/WI-IAT.2012.223
URL : https://hal.archives-ouvertes.fr/hal-00746772

L. Costabello, S. Villata, and F. Gandon, Context-aware access control for rdf graph stores
URL : https://hal.archives-ouvertes.fr/hal-00724041

R. Cyganiak, A relational algebra for SPARQL URL http, HPL-2005-170.html. (Cited on, p.46, 2005.

S. Das, S. Sundara, and R. Cyganiak, R2RML: RDB to RDF Mapping Language, 2012.

J. Dean and S. Ghemawat, MapReduce, Communications of the ACM, vol.51, issue.1, pp.107-113, 2008.
DOI : 10.1145/1327452.1327492

E. Deelman, D. Gannon, M. Shields, and I. Taylor, Workflows and e-Science: An overview of workflow system features and capabilities, Future Generation Computer Systems, vol.25, issue.5, pp.528-540, 2009.
DOI : 10.1016/j.future.2008.06.012

K. Derouiche and D. A. Nicole, Semantically Resolving Type Mismatches in Scientific Workflows, In OTM Workshops, issue.1, pp.125-135, 2007.
DOI : 10.1007/978-3-540-76888-3_32

R. Dieng-kuntz and O. Corby, Conceptual Graphs for Semantic Web Applications, Proceedings of the 13th international conference on Conceptual Structures: common Semantics for Sharing Knowledge, ICCS'05, pp.19-50, 2005.
DOI : 10.1007/11524564_2
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.80.2567

L. Ding, J. Michaelis, J. Mccusker, and D. L. Mcguinness, Linked provenance data: A semantic web-based approach to interoperable workflow traces. Future Generation Computer Systems, pp.49-50
DOI : 10.1016/j.future.2010.10.011

I. Dinov, K. Lozev, P. Petrosyan, Z. Liu, P. Eggert et al., Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline, PLoS ONE, vol.5, issue.9
DOI : 10.1371/journal.pone.0013070.t001

I. D. Dinov, J. D. Van-horn, K. M. Lozev, R. Magsipoc, P. Petrosyan et al., Efficient, Distributed and Interactive Neuroimaging Data Analysis using the LONI Pipeline, Frontiers in Neuroinformatics, vol.3, p.22, 2009.
DOI : 10.3389/neuro.11.022.2009

O. Erling and I. Mikhailov, RDF Support in the Virtuoso DBMS, Conference on Social Semantic Web, pp.59-68, 2007.
DOI : 10.1007/978-3-642-02184-8_2

J. Farrell, H. Lausen, W. , and X. Schema, Semantic Annotations for, 2007.

D. F. Ferraiolo, R. S. Sandhu, S. I. Gavrila, D. R. Kuhn, and R. Chandramouli, Proposed NIST standard for role-based access control, ACM Transactions on Information and System Security, vol.4, issue.3, pp.224-274, 2001.
DOI : 10.1145/501978.501980
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.15.4562

D. Florescu, A. Levy, I. Manolescu, and D. Suciu, Query optimization in the presence of limited access patterns, ACM SIGMOD Record, vol.28, issue.2, pp.311-322, 1999.
DOI : 10.1145/304181.304210
URL : https://hal.archives-ouvertes.fr/inria-00073035

G. Flouris, I. Fundulaki, M. Michou, and G. Antoniou, Controlling Access to RDF Graphs, Proceedings of the Third future internet conference on Future internet, FIS'10, pp.107-117, 2010.
DOI : 10.1007/11926078_3
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.304.5998

G. Forestier, A. Marion, H. Benoit-cattin, P. Clarysse, D. Friboulet et al., Sharing object models for multi-modality medical image simulation: A semantic approach. Computer-Based Medical Systems, IEEE Symposium on, vol.0, pp.1-6, 2011.

G. Forestier, A. Marion, H. Benoit-cattin, P. Clarysse, D. Friboulet et al., Sharing object models for multi-modality medical image simulation: A semantic approach, 2011 24th International Symposium on Computer-Based Medical Systems (CBMS), pp.1-6
DOI : 10.1109/CBMS.2011.5999167

P. Fox and J. A. Hendler, Semantic eScience: encoding meaning in next-generation digitally enhanced science The Fourth Paradigm, pp.147-152, 2009.

J. Futrelle, J. Gaynor, J. Plutchak, J. D. Myers, R. E. Mcgrath et al., Semantic middleware for e-science knowledge spaces, MGC '09: Proceedings of the 7th International Workshop on Middleware for Grids, pp.1-6, 2009.

A. Gaignard and J. Montagnat, A distributed security policy for neuroradiological data sharing, HealthGrid'09, pp.257-262, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00677795

A. Gaignard and J. Montagnat, Intégration des connaissances en neurosciences dans un environnement multi-centrique, 21es Journées francophones d'Ingénierie des Connaissances, pp.21-30, 2010.

A. Gaignard, J. Montagnat, B. Wali, and B. Gibaud, Characterizing semantic service parameters with Role concepts to infer domain-specific knowledge at runtime, International Conference on Knowledge Engineering and Ontology Development, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00677829

A. Gaignard, J. Montagnat, C. Faron-zucker, and O. Corby, Semantic Federation of Distributed Neurodata, MICCAI-DCITAI workshop, Data-and Compute-Intensive Clinical and Translational Imaging Applications, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00746765

A. Gaignard, J. Montagnat, C. Faron-zucker, and O. Corby, Fédération multi-sources en neurosciences : intégration de données relationnelles et sémantiques, 23es Journées francophones d'Ingénierie des Connaissances, 2012.

F. Gibaud, C. Ahmad, F. Barillot, B. Michel, B. Wali et al., A federated system for sharing and reuse of images and image processing tools in neuroimaging, Computer Assisted Radiology and Surgery(CARS'11), 2011.
URL : https://hal.archives-ouvertes.fr/hal-00690921

B. Gibaud, G. Kassel, M. Dojat, B. Batrancourt, F. Michel et al., NeuroLOG: sharing neuroimaging data using an ontology-based federated approach, AMIA ... Annual Symposium proceedings [electronic resource] / AMIA Symposium. AMIA Symposium, pp.472-80, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00683087

B. Gibaud, G. Forestier, H. Benoit-cattin, F. Cervenansky, P. Clarysse et al., Ontovip: An ontology for the annotation of object models used for medical image simulation, 2012 IEEE Second International Conference on, p.110
URL : https://hal.archives-ouvertes.fr/hal-00830912

Y. Gil, V. Ratnakar, E. Deelman, G. Mehta, and J. Kim, Wings for pegasus: Creating largescale scientific applications using semantic representations of computational workflows, AAAI, pp.1767-1774, 2007.

M. Gillam, C. Feied, J. Handler, E. Moody, B. Shneiderman et al., The healthcare singularity and the age of semantic medicine, The Fourth Paradigm, pp.57-64, 2009.

T. Glatard, J. Montagnat, D. Lingrand, and X. Pennec, Flexible and efficient workflow deployement of data-intensive applications on grids with MOTEUR. International Journal of High Performance Computing Applications (IJHPCA) IF=1.109 Special issue on Special Issue on Workflows Systems in Grid Environments, pp.347-360, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00459130

T. Glatard, C. Lartizien, B. Gibaud, R. Da-silva, G. Forestier et al., A Virtual Imaging Platform for Multi-Modality Medical Image Simulation, IEEE Transactions on Medical Imaging, vol.32, issue.1, p.2012
DOI : 10.1109/TMI.2012.2220154
URL : https://hal.archives-ouvertes.fr/inserm-00762497

T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira-da-silva, G. Forestier et al., A Virtual Imaging Platform for Multi-Modality Medical Image Simulation, IEEE Transactions on Medical Imaging (TMI) IF=3.6, p.110
DOI : 10.1109/TMI.2012.2220154
URL : https://hal.archives-ouvertes.fr/inserm-00762497

C. Goble and R. Stevens, State of the nation in data integration for bioinformatics, Journal of Biomedical Informatics, vol.41, issue.5, pp.687-693, 2008.
DOI : 10.1016/j.jbi.2008.01.008

C. Goble, D. De-roure, and S. Bechhofer, Accelerating Scientists??? Knowledge Turns, KDIR, page 7. SciTePress, 2011.
DOI : 10.1007/978-3-642-37186-8_1

C. A. Goble and D. D. Roure, The impact of workflow tools on data-centric research The Fourth Paradigm, pp.137-145, 2009.

A. González-beltrán, B. Tagger, and A. Finkelstein, Ontology-based queries over cancer data, SWAT4LS, 2010.

A. González-beltrán, B. Tagger, and A. Finkelstein, Federated ontology-based queries over cancer data, BMC Bioinformatics, vol.13, issue.Suppl 1, pp.1-24, 2012.
DOI : 10.1186/1471-2105-10-S10-S2

P. M. Gordon and C. W. Sensen, Creating Bioinformatics Semantic Web Services from Existing Web Services: A Real-World Application of SAWSDL, 2008 IEEE International Conference on Web Services, pp.608-614, 2008.
DOI : 10.1109/ICWS.2008.112

O. Görlitz and S. Staab, SPLENDID: SPARQL Endpoint Federation Exploiting VOID Descriptions, Proceedings of the 2nd International Workshop on Consuming Linked Data, pp.41-43, 2011.

K. G. Clark, L. Feigenbaum, and E. Torres, SPARQL Protocol for RDF [http://www.w3.org/tr/rdf-sparql-protocol, 2008.

B. C. Grau, I. Horrocks, B. Motik, B. Parsia, P. Patel-schneider et al., Owl 2: The next step for owl Web Semantics: Science, Services and Agents on the World Wide Web, Semantic Web Challenge, pp.309-322, 2006.

M. Gruninger, R. Hull, and S. Mcilraith, A short overview of flows: A first-order logic ontology of web services, IEEE Data Engineering Bulletin, vol.31, issue.3, pp.3-7, 2008.

Y. Guo, Z. Pan, and J. Heflin, LUBM: A benchmark for OWL knowledge base systems, Web Semantics: Science, Services and Agents on the World Wide Web, pp.158-182, 2005.
DOI : 10.1016/j.websem.2005.06.005

L. M. Haas, J. C. Freytag, G. M. Lohman, and H. Pirahesh, Extensible query processing in starburst, ACM SIGMOD Record, vol.18, issue.2, pp.377-388, 1989.
DOI : 10.1145/66926.66962

L. M. Haas, D. Kossmann, E. L. Wimmers, and J. Yang, Optimizing queries across diverse data sources, Proceedings of the 23rd International Conference on Very Large Data Bases, VLDB '97, pp.276-285, 1997.

P. Haase, T. Mathäß, and M. Ziller, An evaluation of approaches to federated query processing over linked data, Proceedings of the 6th International Conference on Semantic Systems, I-SEMANTICS '10, pp.1-5, 2010.
DOI : 10.1145/1839707.1839713

F. W. Hartel, S. De-coronado, R. Dionne, G. Fragoso, and J. Golbeck, Modeling a description logic vocabulary for cancer research, Journal of Biomedical Informatics, vol.38, issue.2, pp.114-129, 2005.
DOI : 10.1016/j.jbi.2004.09.001

A. Harth, K. Hose, M. Karnstedt, A. Polleres, K. Sattler et al., Data summaries for on-demand queries over linked data, Proceedings of the 19th international conference on World wide web, WWW '10, pp.411-420, 2010.
DOI : 10.1145/1772690.1772733

O. Hartig, C. Bizer, and J. Freytag, Executing sparql queries over the web of linked data. informatikhuberlinde, pp.293-309, 2009.

R. Hasan and F. Gandon, Linking justifications in the collaborative semantic web applications, Proceedings of the 21st international conference companion on World Wide Web, WWW '12 Companion, pp.1083-1090
DOI : 10.1145/2187980.2188245
URL : https://hal.archives-ouvertes.fr/hal-00693176

P. Hayes and B. Mcbride, RDF semantics [http://www.w3.org/tr/rdf-mt], p.34, 2004.

J. Henriksson, M. Pradel, S. Zschaler, and J. Z. Pan, Ontology Design and Reuse with Conceptual Roles, Proceedings of the 2nd International Conference on Web Reasoning and Rule Systems, RR '08, pp.104-118, 2008.
DOI : 10.1007/978-3-540-88737-9_9
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.149.4273

T. Hey and A. Trefethen, Cyberinfrastructure for e-Science, Science, vol.308, issue.5723, pp.817-821, 2005.
DOI : 10.1126/science.1110410

B. Holbrook and W. Brown, A history of computing research at Bell Laboratories (1937-75), 1982.

I. Horrocks, P. F. Patel-schneider, and F. V. Harmelen, From SHIQ and RDF to OWL: the making of a Web Ontology Language, Web Semantics: Science, Services and Agents on the World Wide Web, vol.1, issue.1, 2003.
DOI : 10.1016/j.websem.2003.07.001

I. Horrocks, P. F. Patel-schneider, H. Boley, S. Tabet, B. Grosof et al., SWRL: A Semantic Web Rule Language Combining OWL and RuleML, 2004.

R. Housley and T. Polk, Planning for PKI: Best Practices Guide for Deploying Public Key Infrastructure, 2001.
DOI : 10.1002/047148296x.tie149

D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. R. Pocock et al., Taverna: a tool for building and running workflows of services, Nucleic Acids Research, vol.34, issue.Web Server, pp.729-732, 2006.
DOI : 10.1093/nar/gkl320

L. D. Ibáñez, H. Skaf-molli, P. Molli, and O. Corby, Synchronizing semantic stores with commutative replicated data types, WWW (Companion Volume), pp.1091-1096, 2012.

F. T. Imam, S. D. Larson, A. Bandrowski, J. S. Grethe, A. Gupta et al., Maturation of neuroscience information framework: An ontology driven information system for neuroscience, Frontiers in Artificial Intelligence and Applications, vol.239, pp.15-28

W. Jie, J. Arshad, R. Sinnott, P. Townend, and Z. Lei, A review of grid authentication and authorization technologies and support for federated access control, ACM Computing Surveys, vol.43, issue.2, pp.1-12
DOI : 10.1145/1883612.1883619

M. Kifer and H. Boley, Rif overview

J. Kim, E. Deelman, Y. Gil, G. Mehta, and V. Ratnakar, Provenance trails in the wings/pegasus system. Concurrency and Computation: Practice and Experience, pp.587-597, 2008.

J. Kim, H. Shin, D. Jeong, and D. Baik, Jena Storage Plug-in Providing an Improved Query Processing Performance for Semantic Grid Computing Environment, 2008 11th IEEE International Conference on Computational Science and Engineering, Workshops, pp.393-398, 2008.
DOI : 10.1109/CSEW.2008.71

A. Kiryakov, D. Ognyanov, and D. Manov, OWLIM ?A Pragmatic Semantic Repository for OWL. Web Information Systems Engineering ?WISE 2005 Workshops, pp.182-192, 2005.

M. Koehler and S. Benkner, A Service Oriented Approach for Distributed Data Mediation on the Grid, 2009 Eighth International Conference on Grid and Cooperative Computing, pp.401-408, 2009.
DOI : 10.1109/GCC.2009.35

J. Kopecký, T. Vitvar, C. Bournez, and J. Farrell, SAWSDL: Semantic Annotations for WSDL and XML Schema, IEEE Internet Computing, vol.11, issue.6, pp.60-67, 2007.
DOI : 10.1109/MIC.2007.134

J. Kopecký, K. Gomadam, and T. Vitvar, hRESTS: An HTML Microformat for Describing RESTful Web Services. Web Intelligence and Intelligent Agent Technology, International Conference on, vol.1, pp.619-625, 2008.

D. Kossmann, The state of the art in distributed query processing, ACM Computing Surveys, vol.32, issue.4, pp.422-469, 2000.
DOI : 10.1145/371578.371598

D. Kourtesis and I. Paraskakis, Combining SAWSDL, OWL-DL and UDDI for Semantically Enhanced Web Service Discovery, 5th European Semantic Web Conference (ESWC2008), pp.614-628375, 2008.
DOI : 10.1007/978-3-540-68234-9_45
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.475.9840

U. Küster and B. König-ries, Semantic mediation between business partners -a swschallenge solution using diane service descriptions. Web Intelligence and Intelligent Agent Technology, International Conference on, vol.0, pp.139-143, 2007.

U. Küster, B. König-ries, and A. Krug, OPOSSum -an online portal to collect and share semantic service descriptions, Proceedings of the 5th European Semantic Web Conference (ESWC08), Poster Session, 2008.

G. Ladwig and T. Tran, Linked data query processing strategies In Proceedings of the 9th international semantic web conference on The semantic web -Volume Part I, ISWC'10, pp.453-469, 2010.

G. Ladwig and T. Tran, Sihjoin: querying remote and local linked data semantic web conference on The semantic web: research and applications -Volume Part I, Proceedings of the 8th extended, pp.139-153, 2011.

B. Lang, I. Foster, F. Siebenlist, R. Ananthakrishnan, and T. Freeman, A Multipolicy Authorization Framework for Grid Security, Fifth IEEE International Symposium on Network Computing and Applications (NCA'06), pp.269-272, 2006.
DOI : 10.1109/NCA.2006.4

A. Langegger, A Flexible Architecture for Virtual Information Integration based on Semantic Web Concepts, 2010.

A. Langegger and W. Wöß, RDFStats - An Extensible RDF Statistics Generator and Library, 2009 20th International Workshop on Database and Expert Systems Application, pp.79-83, 2009.
DOI : 10.1109/DEXA.2009.25
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.574.4113

A. Langegger, W. Wöß, and M. Blöchl, A Semantic Web Middleware for Virtual Data Integration on the Web, Proceedings of the 5th European Semantic Web Conference, pp.244-288, 2008.
DOI : 10.1007/978-3-540-68234-9_37

P. Larvet, B. Christophe, and A. Pastor, Semantization of Legacy Web Services: From WSDL to SAWSDL, 2008 Third International Conference on Internet and Web Applications and Services, pp.130-135, 2008.
DOI : 10.1109/ICIW.2008.119

F. Lecue and A. Léger, A formal model for semantic web service composition URL http://data. semanticweb.org, 5th International Semantic Web Conference (ISWC2006), p.35, 2006.

F. Lécue, S. Salibi, P. Bron, and A. Moreau, Semantic and syntactic data flow in web service composition. Web Services, IEEE International Conference on, vol.0, pp.211-218, 2008.

M. Lo and F. Gandon, Integrating dynamic resources in corporate semantic web: an approach to enterprise application integration using semantic web services, 2005.
URL : https://hal.archives-ouvertes.fr/inria-00070345

P. Lord, P. Alper, C. Wroe, and C. Goble, Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery, European Semantic Web Conference, pp.17-31
DOI : 10.1007/11431053_2

S. Lynden, A. Mukherjee, A. C. Hume, A. A. Fernandes, N. W. Paton et al., The design and implementation of OGSA-DQP: A service-based distributed query processor, Future Generation Computer Systems, vol.25, issue.3, pp.224-236, 2009.
DOI : 10.1016/j.future.2008.08.003

S. Madougou, M. Santcroos, A. Benabdelkader, B. D. Van-schaik, S. Shayan et al., Provenance for distributed biomedical workflow execution, HealthGrid'12, pp.91-100

D. Martin, M. Burstein, D. Mcdermott, S. Mcilraith, M. Paolucci et al., Bringing semantics to web services with owl-s. World Wide Web, pp.243-277, 2007.

D. Martin, M. Paolucci, and M. Wagner, Bringing Semantic Annotations to Web Services: OWL-S from the SAWSDL Perspective, ISWC/ASWC, pp.340-352, 2007.
DOI : 10.1007/978-3-540-76298-0_25

L. Martín, A. Anguita, G. De-la-calle, M. García-remesal, J. Crespo et al., Semantic data integration in the European ACGT project, AMIA... Annual Symposium proceedings/AMIA Symposium. AMIA Symposium, p.1042, 2007.

L. Martín, A. Anguita, V. Maojo, E. Bonsma, A. I. Bucur et al., Ontology based Bibliography integration of distributed and heterogeneous data sources in acgt, INSTICC -Institute for Systems and Technologies of Information, Control and Communication, pp.301-306, 2008.

C. Masolo, S. Borgo, A. Gangemi, N. Guarino, and A. Oltramari, WonderWeb Deliverable D18. The WonderWeb Library of Foundational Ontologies and the DOLCE ontology, p.122, 2003.

B. Mcbride, Jena: a semantic Web toolkit, IEEE Internet Computing, vol.6, issue.6, pp.55-59, 2002.
DOI : 10.1109/MIC.2002.1067737

D. L. Mcguinness and F. Van-harmelen, OWL Web Ontology Language Overview [http://www.w3.org/tr/owl-features], 2004.

A. Mclennan, A. Reilhac, and M. Brady, SORTEO: Monte carlo-based simulator with list-mode capabilities, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009.
DOI : 10.1109/IEMBS.2009.5334536

N. Mehandjiev, F. Lecue, U. Wajid, and A. Namoun, Assisted Service Composition for End Users, 2010 Eighth IEEE European Conference on Web Services, pp.131-138, 2010.
DOI : 10.1109/ECOWS.2010.30

F. Michel, A. Gaignard, F. Ahmad, C. Barillot, B. Batrancourt et al., Grid-wide neuroimaging data federation in the context of the NeuroLOG project, HealthGrid'10 AR=45%, pp.112-123, 2010.
URL : https://hal.archives-ouvertes.fr/inserm-00512799

P. Missier and C. Goble, Workflows to open provenance graphs, round-trip Corrected Proof:?, 2010. ISSN 0167-739X, Future Generation Computer Systems, issue.12, pp.5751-5766
DOI : 10.1016/j.future.2010.10.012

P. Missier, S. Sahoo, J. Zhao, C. Goble, and A. Sheth, Janus: From Workflows to Semantic Provenance and Linked Open Data, IPAW-10, 2010.
DOI : 10.1007/978-3-540-30475-3_8
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.470.2189

J. Montagnat, A. Frohner, D. Jouvenot, C. Pera, P. Kunszt et al., A Secure Grid Medical Data Manager Interfaced to the gLite Middleware, Journal of Grid Computing, vol.22, issue.5, pp.45-59, 2008.
DOI : 10.1007/s10723-007-9088-2
URL : https://hal.archives-ouvertes.fr/hal-00683989

J. Montagnat, A. Gaignard, D. Lingrand, J. Rojas-balderrama, P. Collet et al., NeuroLOG: a community-driven middleware design, HealthGrid, pp.49-58, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00461611

J. Montagnat, B. Isnard, T. Glatard, K. Maheshwari, and M. B. Fornarino, A data-driven workflow language for grids based on array programming principles, Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, WORKS '09, pp.1-7, 2009.
DOI : 10.1145/1645164.1645171
URL : https://hal.archives-ouvertes.fr/hal-00677806

G. E. Moore, Cramming More Components Onto Integrated Circuits, Proceedings of the IEEE, vol.86, issue.1, p.38, 1965.
DOI : 10.1109/JPROC.1998.658762

L. Moreau, B. Clifford, J. Freire, Y. Gil, P. Groth et al., The Open Provenance Model core specification (v1.1), Future Generation Computer Systems, vol.27, issue.6, 2009.
DOI : 10.1016/j.future.2010.07.005

L. Moreau, L. Ding, J. Futrelle, D. Garijo, P. Groth et al., Open Provenance Model (OPM) OWL Specification, 2010.
DOI : 10.1016/j.future.2010.07.005

L. Moreau, B. Clifford, J. Freire, J. Futrelle, Y. Gil et al., The Open Provenance Model Core Specification (v1.1) To appear in Future Generation Computer Systems, pp.136-139, 2011.

D. Nardi and R. J. Brachman, An Introduction to Description Logics, pp.1-40, 2003.
DOI : 10.1017/CBO9780511711787.003

J. Pérez, M. Arenas, and C. Gutierrez, Semantics and complexity of sparql, International Semantic Web Conference, pp.30-43, 2006.

J. Pérez, M. Arenas, and C. Gutierrez, Semantics and complexity of sparql, ACM Trans. Database Syst, vol.3416, issue.46, pp.1-16, 0200.

C. Petrie, T. Margaria, H. Lausen, and M. Zaremba, Introduction to the first year of the semantic web services challenge Semantic Web Services Challenge, pp.1-11978, 2008.

S. Polovina, An Introduction to Conceptual Graphs, ICCS '07: Proceedings of the 15th international conference on Conceptual Structures, pp.1-14, 2007.
DOI : 10.1007/978-3-540-73681-3_1

E. Prud-'hommeaux and A. Seaborne, SPARQL Query Language for RDF [http://www.w3.org/TR/rdf-sparql-query], p.30, 2008.

C. Qu, F. Zimmermann, K. Kumpf, R. Kamuzinzi, V. Ledent et al., Semantics- Enabled Service Discovery Framework in the SIMDAT Pharma Grid, IEEE Transactions on Information Technology in Biomedicine, vol.12, issue.2, pp.182-190, 2008.

B. Quilitz and U. Leser, Querying distributed rdf data sources with sparql. The Semantic Web Research and Applications, pp.524-538, 2008.
DOI : 10.1007/978-3-540-68234-9_39
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.385.9763

H. Rahmouni, T. Solomonides, M. Mont, and S. Shiu, Privacy compliance and enforcement on European healthgrids: an approach through ontology, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.150, issue.1926, pp.4057-4072, 1926.
DOI : 10.1098/rsta.2010.0169

A. F. Frangi, @neurist -towards a system architecture for advanced disease management through integration of heterogeneous data, computing, and complex processing services, CBMS, pp.361-366, 2008.

K. Rohloff, M. Dean, I. Emmons, D. Ryder, and J. Sumner, An evaluation of triple-store technologies for large data stores. On the Move to Meaningful Internet Systems, OTM 2007 Workshops, pp.1105-1114, 2007.

J. Rojas-balderrama, J. Montagnat, and D. Lingrand, jGASW: A Service-Oriented Framework Supporting High Throughput Computing and Non-functional Concerns, IEEE International Conference on Web Services, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00677819

D. Roman, J. De-bruijn, A. Mocan, H. Lausen, J. Domingue et al., WWW: WSMO, WSML, and WSMX in a Nutshell, pp.516-522, 2006.
DOI : 10.1007/11836025_49

O. Sacco, A. Passant, and S. Decker, An Access Control Framework for the Web of Data, 2011IEEE 10th International Conference on Trust, Security and Privacy in Computing and Communications, pp.456-463
DOI : 10.1109/TrustCom.2011.59

S. S. Sahoo and A. Sheth, Provenir ontology: Towards a framework for escience provenance management, Microsoft eScience Workshop, p.120, 2009.

S. S. Sahoo, A. Sheth, and C. Henson, Semantic Provenance for eScience: Managing the Deluge of Scientific Data, IEEE Internet Computing, vol.12, issue.4, pp.46-54, 2008.
DOI : 10.1109/MIC.2008.86

S. S. Sahoo, O. Bodenreider, P. Hitzler, A. Sheth, and K. Thirunarayan, Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data, Proceedings of the 22nd international conference on Scientific and statistical database management, SSDBM'10, pp.461-470, 2010.
DOI : 10.1007/978-3-642-13818-8_32
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4303908

J. Saltz, S. Oster, S. Hastings, S. Langella, T. Kurc et al., caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid, Bioinformatics, vol.22, issue.15, pp.1910-1916, 1910.
DOI : 10.1093/bioinformatics/btl272

R. S. Sandhu, E. J. Coyne, H. L. Feinstein, and C. E. Youman, Role-based access control models, Computer, vol.29, issue.2, pp.38-47, 1996.
DOI : 10.1109/2.485845

S. Data-federator, URL http://www.sap.com/solutions/technology/ enterprise-information-management/data-integrator/index.epx

D. Scardaci and G. Scuderi, Managing Confidential Data in the gLite Middleware, 16th IEEE International Workshops on Enabling Technologies: Infrastructure for Collaborative Enterprises (WETICE 2007), pp.298-299, 2007.
DOI : 10.1109/WETICE.2007.4407175

M. Schmidt, T. Hornung, G. Lausen, and C. Pinkel, Sp2bench: A sparql performance benchmark. CoRR, abs/0806, 2008.

M. Schmidt, M. Meier, and G. Lausen, Foundations of SPARQL query optimization, Proceedings of the 13th International Conference on Database Theory, ICDT '10, pp.4-33, 2010.
DOI : 10.1145/1804669.1804675

M. Schmidt, O. Görlitz, P. Haase, G. Ladwig, A. Schwarte et al., FedBench: A Benchmark Suite for Federated Semantic Data Query Processing, 10th International Semantic Web Conference, p.2011
DOI : 10.1007/3-540-48005-6_12

A. Schwarte, P. Haase, K. Hose, R. Schenkel, and M. Schmidt, Fedx: optimization techniques for federated query processing on linked data on The semantic web -Volume Part I, Proceedings of the 10th international conference, pp.601-616, 2011.

L. Seitz, J. Pierson, and L. Brunie, Key Management for Encrypted Data Storage in Distributed Systems, Second IEEE International Security in Storage Workshop, pp.20-30, 2003.
DOI : 10.1109/SISW.2003.10001

P. G. Selinger, M. M. Astrahan, D. D. Chamberlin, R. A. Lorie, and T. G. Price, Access path selection in a relational database management system, Proceedings of the 1979 ACM SIGMOD international conference on Management of data , SIGMOD '79, pp.23-34, 1979.
DOI : 10.1145/582095.582099

S. T. Selvi, R. Balachandar, K. Vijayakumar, N. Mohanram, M. Vandana et al., Semantic discovery of grid services using functionality based matchmaking algorithm. Web Intelligence, ACM International Conference on, pp.170-173, 2006.

A. P. Sheth, K. Gomadam, A. Ranabahu-s, and S. Sawsdl, Semantics enhanced Services: METEOR, IEEE Data Eng. Bull, vol.31, issue.3, pp.8-12, 2008.

R. O. Sinnott, D. W. Chadwick, T. Doherty, D. Martin, A. Stell et al., Advanced Security for Virtual Organizations: The Pros and Cons of Centralized vs Decentralized Security Models, 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), pp.106-113, 2008.
DOI : 10.1109/CCGRID.2008.67

B. Smith, B. Ceusters, J. Klagges, A. Kohler, J. Kumar et al., Relations in biomedical ontologies, Genome Biology, vol.6, issue.5, p.46, 2005.
DOI : 10.1186/gb-2005-6-5-r46

B. Smith, C. Ashburner, J. Rosse, W. Bard, W. Bug et al., The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration, Nature Biotechnology, vol.10, issue.11, pp.1251-1255, 2007.
DOI : 10.1038/nbt1346

J. F. Sowa, On conceptual structures, Artificial Intelligence, vol.34, issue.3, pp.32-129, 1984.
DOI : 10.1016/0004-3702(88)90069-0

J. Sroka, J. Hidders, P. Missier, and C. Goble, A formal semantics for the Taverna 2 workflow model, Journal of Computer and System Sciences, vol.76, issue.6, pp.490-508, 2010.
DOI : 10.1016/j.jcss.2009.11.009

A. Stell, R. Sinnott, O. Ajayi, and J. Jiang, Security Oriented e-Infrastructures Supporting Neurological Research and Clinical Trials, The Second International Conference on Availability, Reliability and Security (ARES'07), pp.629-636, 2007.
DOI : 10.1109/ARES.2007.137
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.129.2248

M. Stocker and M. Smith, Owlgres: A scalable owl reasoner, OWLED, 2008.

M. Stocker, A. Seaborne, A. Bernstein, C. Kiefer, and D. Reynolds, SPARQL basic graph pattern optimization using selectivity estimation, Proceeding of the 17th international conference on World Wide Web , WWW '08, pp.595-604, 2008.
DOI : 10.1145/1367497.1367578
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.401.557

V. Stodden, The Scientific Method in Practice: Reproducibility in the Computational Sciences, SSRN Electronic Journal
DOI : 10.2139/ssrn.1550193

R. Studer, V. R. Benjamins, and D. Fensel, Knowledge engineering: Principles and methods, Data & Knowledge Engineering, vol.25, issue.1-2, pp.161-197, 1998.
DOI : 10.1016/S0169-023X(97)00056-6
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.41.1007

M. Svihla and I. Jelínek, Benchmarking RDF Production Tools, Lecture Notes in Computer Science, vol.4653, pp.700-709, 2007.
DOI : 10.1007/978-3-540-74469-6_68
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.617.5546

L. Temal, M. Dojat, G. Kassel, and B. Gibaud, Towards an ontology for sharing medical images and regions of interest in neuroimaging, Journal of Biomedical Informatics, vol.41, issue.5, pp.766-778, 2008.
DOI : 10.1016/j.jbi.2008.03.002
URL : https://hal.archives-ouvertes.fr/inserm-00344293

G. Tummarello, C. Morbidoni, R. Bachmann-gmür, and O. Erling, RDFSync: Efficient Remote Synchronization of RDF Models, 6th Int. Semantic Web Conf, pp.537-551, 2007.
DOI : 10.1007/978-3-540-76298-0_39

T. Vitvar, J. Kopecky, J. Viskova, and D. Fensel, WSMO-Lite Annotations for Web Services, 5th European Semantic Web Conference (ESWC2008), pp.674-689, 2008.
DOI : 10.1007/978-3-540-68234-9_49

D. Withers, E. Kawas, L. Mccarthy, B. Vandervalk, and M. Wilkinson, Semanticallyguided workflow construction in taverna: the sadi and biomoby plug-ins on Leveraging applications of formal methods, verification, and validation -Volume Part I, ISoLA'10, Proceedings of the 4th international conference, pp.301-312, 2010.

K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P. W. Lord et al., The <SUP align=right>my</SUP>Grid ontology: bioinformatics service discovery, International Journal of Bioinformatics Research and Applications, vol.3, issue.3, pp.303-325, 2007.
DOI : 10.1504/IJBRA.2007.015005

C. A. Wroe, A. Goble, P. W. Goderis, S. Lord, J. Miles et al., Recycling workflows and services through discovery and reuse, Concurrency and Computation: Practice and Experience, vol.1, issue.2, pp.181-194, 2007.
DOI : 10.1002/cpe.1050