A. Thierry, C. Bouchier, B. Dujon, and G. Richard, Megasatellites: a peculiar class of giant minisatellites in genes involved in cell adhesion and pathogenicity in Candida glabrata, Nucleic Acids Research, vol.36, issue.18, pp.5970-5982, 2008.
DOI : 10.1093/nar/gkn594

A. Thierry, B. Dujon, and G. F. Richard, Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata, Cellular and Molecular Life Sciences, vol.48, issue.5, pp.671-676, 2009.
DOI : 10.1007/s00018-009-0216-y

URL : https://hal.archives-ouvertes.fr/pasteur-01370699

G. Richard and B. Dujon, Molecular Evolution of Minisatellites in Hemiascomycetous Yeasts, Molecular Biology and Evolution, vol.23, issue.1, pp.189-202, 2006.
DOI : 10.1093/molbev/msj022

S. Bowen, C. Roberts, and A. E. Wheals, Patterns of polymorphism and divergence in stress-related yeast proteins, Yeast, vol.155, issue.8, pp.659-668, 2005.
DOI : 10.1002/yea.1240

K. J. Verstrepen, A. Jansen, F. Lewitter, and G. R. Fink, Intragenic tandem repeats generate functional variability, Nature Genetics, vol.4, issue.9, pp.986-990, 2005.
DOI : 10.1126/science.291.5505.878

J. E. Haber and E. J. Louis, Minisatellite Origins in Yeast and Humans, Genomics, vol.48, issue.1, pp.132-135, 1998.
DOI : 10.1006/geno.1997.5153

R. Chenna, H. Sugawara, T. Koike, R. Lopez, and T. J. Gibson, Multiple sequence alignment with the Clustal series of programs, Nucleic Acids Research, vol.31, issue.13, pp.3497-3500, 2003.
DOI : 10.1093/nar/gkg500

J. D. Thompson, T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Research, vol.25, issue.24, pp.4876-4882, 1997.
DOI : 10.1093/nar/25.24.4876

Z. Yang, PAML: a program package for phylogenetic analysis by maximum likelihood, Bioinformatics, vol.13, issue.5, pp.555-556, 1997.
DOI : 10.1093/bioinformatics/13.5.555

K. Tamura and M. Nei, Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees, Mol. Biol. Evol, vol.10, pp.512-526, 1993.

J. Felsenstein, Distance Methods for Inferring Phylogenies: A Justification, Evolution, vol.38, issue.1, pp.16-24, 1984.
DOI : 10.2307/2408542

M. Hasegawa, H. Kishino, and T. Yano, Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, Journal of Molecular Evolution, vol.275, issue.3, pp.160-174, 1985.
DOI : 10.1007/BF02101694

T. H. Jukes and C. R. Cantor, Evolution of Protein Molecules, Mammalian Protein Metabolism, pp.21-123, 1969.
DOI : 10.1016/B978-1-4832-3211-9.50009-7

M. Kimura, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, vol.206, issue.5, Nov., pp.111-120, 1980.
DOI : 10.1007/BF01731581

D. Bauer, Constructing Confidence Sets Using Rank Statistics, Journal of the American Statistical Association, vol.42, issue.339, pp.687-690, 1972.
DOI : 10.2307/1266308

R. Development and C. Team, R: A language and environment for statistical computing. R Foundation for Statistical Computing, 2008.

E. W. Dijkstra, A note on two problems in connexion with graphs, Numerische Mathematik, vol.4, issue.1, pp.269-271, 1959.
DOI : 10.1007/BF01386390

I. Castano, S. Pan, M. Zupancic, C. Hennequin, B. Dujon et al., Telomere length control and transcriptional regulation of subtelomeric adhesins in Candida glabrata, Molecular Microbiology, vol.11, issue.4, pp.1246-1258, 2005.
DOI : 10.1111/j.1365-2958.2004.04465.x

C. Fairhead and B. Dujon, subtelomeres: duplications and gene content, FEMS Yeast Research, vol.6, issue.3, pp.428-441, 2006.
DOI : 10.1111/j.1567-1364.2006.00033.x

E. J. Louis, E. S. Naumova, A. Lee, G. Naumov, and J. E. Haber, The chromosome end in yeast: its mosaic nature and influence on recombinational dynamics, Genetics, vol.136, pp.789-802, 1994.

P. Therizols, T. Duong, B. Dujon, C. Zimmer, and E. Fabre, Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres, Proc. Natl Acad. Sci. USA, pp.2025-2030, 2010.
DOI : 10.1073/pnas.0914187107

F. Pa?quespa?ques, G. Richard, and J. E. Haber, Expansions and contractions in 36-bp minisatellites by gene conversion in yeast, Genetics, vol.158, pp.155-166, 2001.

F. Pa?quespa?ques, W. Leung, and J. E. Haber, Expansions and Contractions in a Tandem Repeat Induced by Double-Strand Break Repair, Molecular and Cellular Biology, vol.18, issue.4, pp.2045-2054, 1998.
DOI : 10.1128/MCB.18.4.2045

B. P. Cormack and S. Falkow, Efficient homologous and illegitimate recombination in the opportunistic yeast pathogen Candida glabrata, Genetics, vol.151, pp.979-987, 1999.

G. Richard, A. Kerrest, I. Lafontaine, and B. Dujon, Comparative Genomics of Hemiascomycete Yeasts: Genes Involved in DNA Replication, Repair, and Recombination, Molecular Biology and Evolution, vol.22, issue.4, pp.1011-1023, 2005.
DOI : 10.1093/molbev/msi083

F. Pa?quespa?ques and J. E. Haber, Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae, Microbiol. Mol. Biol. Rev, vol.63, pp.349-404, 1999.

G. F. Richard, A. Kerrest, and B. Dujon, Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes, Microbiology and Molecular Biology Reviews, vol.72, issue.4, pp.686-727, 2008.
DOI : 10.1128/MMBR.00011-08

J. C. Davis and D. A. Petrov, Preferential Duplication of Conserved Proteins in Eukaryotic Genomes, PLoS Biology, vol.13, issue.3, pp.318-326, 2004.
DOI : 10.1371/journal.pbio.0020055.t003

I. K. Jordan, Y. I. Wolf, and E. V. Koonin, Duplicated genes evolve slower than singletons despite the initial rate increase, BMC Evolutionary Biology, vol.4, issue.1, p.22, 2004.
DOI : 10.1186/1471-2148-4-22

F. A. Kondrashov, I. B. Rogozin, Y. I. Wolf, and E. V. Koonin, Selection in the evolution of gene duplications, Genome Biol, vol.3, pp.8-9, 2002.