J. Aaskov, C. Davies, M. Tucker, and D. Dalglish, Effect on mice of infection during pregnancy with three Australian arboviruses, Am J Trop Med Hyg, vol.30, pp.198-203, 1981.

J. Aaskov, K. Nair, G. Lawrence, D. Dalglish, and M. Tucker, Evidence for transplacental transmission of Ross River virus in humans, Med J Aust, vol.2, pp.20-21, 1981.

B. Adkins, C. Leclerc, and S. Marshall-clarke, Neonatal adaptive immunity comes of age, Nature Reviews Immunology, vol.20, issue.7, pp.553-564, 2004.
DOI : 10.1038/nri1394

W. Akahata, Z. Yang, H. Andersen, S. Sun, H. Holdaway et al., A virus-like particle vaccine for epidemic Chikungunya virus protects nonhuman primates against infection, Nature Medicine, vol.128, issue.3, pp.334-338, 2010.
DOI : 10.1038/nm.2105

H. Appassakij, P. Khuntikij, M. Kemapunmanus, R. Wutthanarungsan, and K. Silpapojakul, Viremic profiles in asymptomatic and symptomatic chikungunya fever: a blood transfusion threat?, Transfusion, vol.29, issue.10pt2, pp.2567-2574, 2013.
DOI : 10.1111/j.1537-2995.2012.03960.x

E. Bernard, R. Hamel, A. Neyret, P. Ekchariyawat, J. Moles et al., Human keratinocytes restrict chikungunya virus replication at a post-fusion step, Virology, vol.476, pp.1-10, 2015.
DOI : 10.1016/j.virol.2014.11.013

URL : https://hal.archives-ouvertes.fr/hal-01131877

L. Binn, V. Harrison, and R. Randall, Patterns of viremia and antibody observed in rhesus monkeys inoculated with chikungunya and other serologically related group A arboviruses, Am J Trop Med Hyg, vol.16, pp.782-785, 1967.

W. Boere, B. Benaissa-trouw, M. Harmsen, C. Kraaijeveld, and H. Snippe, Neutralizing and Non-neutralizing Monoclonal Antibodies to the E2 Glycoprotein of Semliki Forest Virus Can Protect Mice from Lethal Encephalitis, Journal of General Virology, vol.64, issue.6, pp.1405-1408, 1983.
DOI : 10.1099/0022-1317-64-6-1405

G. Borgherini, P. Poubeau, F. Staikowsky, L. M. , L. Moullec et al., Outbreak of Chikungunya on Reunion Island: Early Clinical and Laboratory Features in 157 Adult Patients, Clinical Infectious Diseases, vol.44, issue.11, pp.1401-1407, 2007.
DOI : 10.1086/517537

G. Borgherini, P. Poubeau, A. Jossaume, A. Gouix, L. Cotte et al., Persistent Arthralgia Associated with Chikungunya Virus: A Study of 88 Adult Patients on Reunion Island, Clinical Infectious Diseases, vol.47, issue.4, pp.469-475, 2008.
DOI : 10.1086/590003

A. Brehin, I. Casademont, M. Frenkiel, C. Julier, A. Sakuntabhai et al., The large form of human 2???,5???-Oligoadenylate Synthetase (OAS3) exerts antiviral effect against Chikungunya virus, Virology, vol.384, issue.1, pp.216-222, 2009.
DOI : 10.1016/j.virol.2008.10.021

F. Burt, W. Chen, and S. Mahalingam, Chikungunya virus and arthritic disease, The Lancet Infectious Diseases, vol.14, issue.9, pp.789-790, 2014.
DOI : 10.1016/S1473-3099(14)70869-2

F. Burt, M. Rolph, N. Rulli, S. Mahalingam, and M. Heise, Chikungunya: a re-emerging virus, The Lancet, vol.379, issue.9816, pp.662-671, 2012.
DOI : 10.1016/S0140-6736(11)60281-X

D. Carey, R. Myers, C. Deranitz, M. Jadhav, and R. Reuben, The 1964 chikungunya epidemic at vellore, South India, including observations on concurrent dengue, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.63, issue.4, pp.434-445, 1969.
DOI : 10.1016/0035-9203(69)90030-3

I. Chaaitanya, N. Muruganandam, S. Sundaram, O. Kawalekar, A. Sugunan et al., Role of Proinflammatory Cytokines and Chemokines in Chronic Arthropathy in CHIKV Infection, Viral Immunology, vol.24, issue.4, pp.265-271, 2011.
DOI : 10.1089/vim.2010.0123

C. Chen, D. Clark, P. Pesavento, N. Lerche, P. Luciw et al., Comparative Pathogenesis of Epidemic and Enzootic Chikungunya Viruses in a Pregnant Rhesus Macaque Model, American Journal of Tropical Medicine and Hygiene, vol.83, issue.6, pp.1249-1258, 2010.
DOI : 10.4269/ajtmh.2010.10-0290

W. Chen, S. Foo, N. Rulli, A. Taylor, K. Sheng et al., Arthritogenic alphaviral infection perturbs osteoblast function and triggers pathologic bone loss, Proceedings of the National Academy of Sciences, vol.111, issue.16, pp.6040-6045, 2014.
DOI : 10.1073/pnas.1318859111

W. Chen, S. Foo, A. Taylor, A. Lulla, A. Merits et al., Bindarit, an inhibitor of monocyte chemotactic protein synthesis, protects against bone loss induced by chikungunya virus infection Persistent arthralgia induced by Chikungunya virus infection is associated with interleukin-6 and granulocyte macrophage colonystimulating factor, J Virol J Infect Dis, vol.89, issue.203, pp.581-593149, 2011.

T. Couderc, F. Chrétien, C. Schilte, O. Disson, M. Brigitte et al., A Mouse Model for Chikungunya: Young Age and Inefficient Type-I Interferon Signaling Are Risk Factors for Severe Disease, PLoS Pathogens, vol.41, issue.2, pp.29-21516, 2008.
DOI : 10.1371/journal.ppat.0040029.sg003

URL : https://hal.archives-ouvertes.fr/pasteur-01402310

T. Couderc, N. Gangneux, F. Chretien, V. Caro, L. Luong et al., Chikungunya Virus Infection of Corneal Grafts, Journal of Infectious Diseases, vol.206, issue.6, pp.851-859, 2012.
DOI : 10.1093/infdis/jis296

E. Couturier, F. Guillemin, M. Mura, L. Leon, J. Virion et al., Impaired quality of life after chikungunya virus infection: a 2-year follow-up study, Rheumatology, vol.51, issue.7, pp.1315-1322, 2012.
DOI : 10.1093/rheumatology/kes015

T. Das, M. Jaffar-bandjee, J. Hoarau, K. Trotot, P. Denizot et al., Chikungunya fever: CNS infection and pathologies of a re-emerging arbovirus, Progress in Neurobiology, vol.91, issue.2, pp.121-129, 2010.
DOI : 10.1016/j.pneurobio.2009.12.006

URL : https://hal.archives-ouvertes.fr/hal-01274626

T. Das, J. Hoarau, J. Bandjee, M. Maquart, M. Gasque et al., Multifaceted innate immune responses engaged by astrocytes, microglia and resident dendritic cells against Chikungunya neuroinfection, Journal of General Virology, vol.96, issue.Pt_2, pp.294-310, 2015.
DOI : 10.1099/vir.0.071175-0

URL : https://hal.archives-ouvertes.fr/hal-01285418

R. Dhanwani, M. Khan, S. Alam, P. Rao, and M. Parida, Differential proteome analysis of Chikungunya virus-infected new-born mice tissues reveal implication of stress, inflammatory and apoptotic pathways in disease pathogenesis, PROTEOMICS, vol.63, issue.10, pp.1936-1951, 2011.
DOI : 10.1002/pmic.201000500

S. Dutta, T. Pal, B. Saha, S. Mandal, and A. Tripathi, Copy number variation of chikungunya ECSA virus with disease symptoms among Indian patients, Journal of Medical Virology, vol.28, issue.8, pp.1386-1392, 2014.
DOI : 10.1002/jmv.23794

A. Economopoulou, M. Dominguez, B. Helynck, D. Sissoko, O. Wichmann et al., Atypical Chikungunya virus infections: clinical manifestations, mortality and risk factors for severe disease during the 2005???2006 outbreak on R??union, Epidemiology and Infection, vol.38, issue.04, pp.534-541, 2009.
DOI : 10.1086/518701

P. Ekchariyawat, R. Hamel, E. Bernard, S. Wichit, P. Surasombatpattana et al., Inflammasome signaling pathways exert antiviral effect against Chikungunya virus in human dermal fibroblasts, Infection, Genetics and Evolution, vol.32, pp.401-408, 2015.
DOI : 10.1016/j.meegid.2015.03.025

URL : https://hal.archives-ouvertes.fr/hal-01148961

P. Farber and L. Glasgow, Effect of Corynebacterium acnes on interferon production in mice, Infect Immun, vol.6, pp.272-276, 1972.

M. Ferguson, S. Saul, R. Fragkoudis, S. Weisheit, J. Cox et al., ABSTRACT, Journal of Virology, vol.89, issue.15, 2015.
DOI : 10.1128/JVI.03645-14

M. Foissac, E. Javelle, S. Ray, B. Guerin, and F. Simon, Post-Chikungunya Rheumatoid Arthritis, Saint Martin, Emerging Infectious Diseases, vol.21, issue.3, pp.530-532, 2015.
DOI : 10.3201/eid2103.141397

R. Fong, S. Banik, K. Mattia, T. Barnes, D. Tucker et al., Exposure of Epitope Residues on the Outer Face of the Chikungunya Virus Envelope Trimer Determines Antibody Neutralizing Efficacy, Journal of Virology, vol.88, issue.24, pp.14364-14379, 2014.
DOI : 10.1128/JVI.01943-14

E. Fourie and J. Morrison, Rheumatoid arthritic syndrome after chikungunya fever, S Afr Med J, vol.56, pp.130-132, 1979.

J. Fric, S. Bertin-maghit, C. Wang, A. Nardin, and L. Warter, Use of Human Monoclonal Antibodies to Treat Chikungunya Virus Infection, Journal of Infectious Diseases, vol.207, issue.2, pp.319-322, 2013.
DOI : 10.1093/infdis/jis674

M. Ganu and A. Ganu, Post-chikungunya chronic arthritis--our experience with DMARDs over two year follow up, J Assoc Physicians India, vol.59, pp.83-86, 2011.

J. Gardner, I. Anraku, T. Le, T. Larcher, L. Major et al., Chikungunya Virus Arthritis in Adult Wild-Type Mice, Journal of Virology, vol.84, issue.16, pp.8021-8032, 2010.
DOI : 10.1128/JVI.02603-09

P. Gasque, T. Couderc, M. Lecuit, P. Roques, and L. Ng, Chikungunya Virus Pathogenesis and Immunity, Vector-Borne and Zoonotic Diseases, vol.15, issue.4, pp.241-249, 2015.
DOI : 10.1089/vbz.2014.1710

URL : https://hal.archives-ouvertes.fr/hal-01274548

P. Gerardin, G. Barau, A. Michault, M. Bintner, H. Randrianaivo et al., Multidisciplinary prospective study of mother-to-child chikungunya virus infections on the island of La Reunion Neurocognitive outcome of children exposed to perinatal mother-to-child Chikungunya virus infection: the CHIMERE cohort study on Reunion Island, PLoS Med PLoS Negl Trop Dis, vol.5, issue.8, pp.60-100, 2008.

L. Glasgow, T. Odugbemi, P. Dwyer, and A. Ritterson, Eperythrozoon coccoides. I. Effect on the interferon response in mice, Infect Immun, vol.4, pp.425-430, 1971.

L. Goh, J. Hobson-peters, N. Prow, J. Gardner, H. Bielefeldt-ohmann et al., Neutralizing monoclonal antibodies to the E2 protein of chikungunya virus protects against disease in a mouse model, Clinical Immunology, vol.149, issue.3, pp.487-497, 2013.
DOI : 10.1016/j.clim.2013.10.004

F. Grieder and S. Vogel, Role of Interferon and Interferon Regulatory Factors in Early Protection against Venezuelan Equine Encephalitis Virus Infection, Virology, vol.257, issue.1, pp.106-118, 1999.
DOI : 10.1006/viro.1999.9662

D. Griffin, Alphaviruses, pp.1023-1068, 2007.
DOI : 10.1002/0471203076.emm0776

P. Grivard, L. Roux, K. Laurent, P. Fianu, A. Perrau et al., Molecular and??serological diagnosis of??Chikungunya virus infection, Pathologie Biologie, vol.55, issue.10, pp.490-494, 2007.
DOI : 10.1016/j.patbio.2007.07.002

URL : https://hal.archives-ouvertes.fr/hal-01186459

D. Gupta, A. Bose, R. W. Hawman, D. Stoermer, K. Montgomery et al., Acquired Neonatal Chikungunya Encephalopathy Chronic joint disease caused by persistent Chikungunya virus infection is controlled by the adaptive immune response, Indian J Pediatr J Virol, vol.47, issue.87, pp.13878-13888, 2013.

M. Heise, D. Simpson, and R. Johnston, Sindbis-Group Alphavirus Replication in Periosteum and Endosteum of Long Bones in Adult Mice, Journal of Virology, vol.74, issue.19, pp.9294-9299, 2000.
DOI : 10.1128/JVI.74.19.9294-9299.2000

Z. Her, B. Malleret, M. Chan, E. Ong, S. Wong et al., Active Infection of Human Blood Monocytes by Chikungunya Virus Triggers an Innate Immune Response, The Journal of Immunology, vol.184, issue.10, pp.5903-5913, 2010.
DOI : 10.4049/jimmunol.0904181

Z. Her, T. Teng, J. Tan, T. Teo, Y. Kam et al., Loss of TLR3 aggravates CHIKV replication and pathology due to an altered virus-specific neutralizing antibody response, EMBO Molecular Medicine, vol.7, issue.1, pp.24-41, 2015.
DOI : 10.15252/emmm.201404459

M. Higgs, H. Lerat, and J. Pawlotsky, Downregulation of Gadd45?? Expression by Hepatitis C Virus Leads to Defective Cell Cycle Arrest, Cancer Research, vol.70, issue.12, pp.4901-4911, 2010.
DOI : 10.1158/0008-5472.CAN-09-4554

URL : https://hal.archives-ouvertes.fr/inserm-00495496

J. Hoarau, J. Bandjee, M. , K. Trotot, P. Das et al., Persistent Chronic Inflammation and Infection by Chikungunya Arthritogenic Alphavirus in Spite of a Robust Host Immune Response, The Journal of Immunology, vol.184, issue.10, pp.5914-5927, 2010.
DOI : 10.4049/jimmunol.0900255

URL : https://hal.archives-ouvertes.fr/hal-01285461

S. Jacups, P. Whelan, and B. Currie, Ross River Virus and Barmah Forest Virus Infections: A Review of History, Ecology, and Predictive Models, with Implications for Tropical Northern Australia, Vector-Borne and Zoonotic Diseases, vol.8, issue.2, pp.283-297, 2008.
DOI : 10.1089/vbz.2007.0152

M. Jaffar-bandjee, D. Ramful, B. Gauzere, J. Hoarau, P. Krejbich-trotot et al., Emergence and clinical insights into the pathology of Chikungunya virus infection, Expert Review of Anti-infective Therapy, vol.8, issue.9, pp.987-996, 2010.
DOI : 10.1586/eri.10.92

URL : https://hal.archives-ouvertes.fr/hal-01274634

E. Javelle, A. Ribera, I. Degasne, B. Gauzere, C. Marimoutou et al., Specific management of post-chikungunya rheumatic disorders: a retrospective study of 159 cases in Reunion Island from, PLoS Negl Trop Dis Ledrans M Emerg Infect Dis, vol.9, issue.12, pp.3603-561994, 2006.

P. Joubert, S. Werneke, C. De-la-calle, F. Guivel-benhassine, A. Giodini et al., Chikungunya virus???induced autophagy delays caspase-dependent cell death, The Journal of Experimental Medicine, vol.37, issue.5, pp.1029-1047, 2012.
DOI : 10.1038/nrm3025

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3348111

D. Judith, S. Mostowy, M. Bourai, N. Gangneux, M. Lelek et al., Species-specific impact of the autophagy machinery on Chikungunya virus infection, EMBO reports, vol.285, issue.6, pp.534-544, 2013.
DOI : 10.1016/j.cell.2012.06.040

Y. Kam, D. Simarmata, A. Chow, Z. Her, T. Teng et al., Early Appearance of Neutralizing Immunoglobulin G3 Antibodies Is Associated With Chikungunya Virus Clearance and Long-term Clinical Protection, Journal of Infectious Diseases, vol.205, issue.7, pp.1147-1154, 2012.
DOI : 10.1093/infdis/jis033

A. Kelvin, D. Banner, G. Silvi, M. Moro, N. Spataro et al., Inflammatory cytokine expression is associated with chikungunya virus resolution and symptom severity Chikungunya virus mobilizes the apoptotic machinery to invade host cell defenses, PLoS Negl Trop Dis Faseb J, vol.5, issue.25, pp.314-325, 2011.

S. Kumar, M. Jaffar-bandjee, C. Giry, C. De-kerillis, L. Merits et al., Mouse macrophage innate immune response to chikungunya virus infection, Virology Journal, vol.9, issue.1, p.313, 2012.
DOI : 10.1586/eri.10.92

URL : https://hal.archives-ouvertes.fr/hal-01285443

K. Labadie, T. Larcher, C. Joubert, A. Mannioui, B. Delache et al., Chikungunya disease in nonhuman primates involves long-term viral persistence in macrophages, Journal of Clinical Investigation, vol.120, issue.3, pp.894-906, 2010.
DOI : 10.1172/JCI40104DS1

P. Lalitha, S. Rathinam, K. Banushree, S. Maheshkumar, R. Vijayakumar et al., Ocular Involvement Associated With an Epidemic Outbreak of Chikungunya Virus Infection, American Journal of Ophthalmology, vol.144, issue.4, pp.552-556, 2007.
DOI : 10.1016/j.ajo.2007.06.002

H. Langevin, C. Cornbrooks, and D. Taatjes, Fibroblasts form a body-wide cellular network, Histochemistry and Cell Biology, vol.122, issue.1, pp.7-15, 2004.
DOI : 10.1007/s00418-004-0667-z

S. Larrieu, N. Pouderoux, T. Pistone, L. Filleul, M. Receveur et al., Factors associated with persistence of arthralgia among chikungunya virus-infected travellers: Report of 42 French cases, Journal of Clinical Virology, vol.47, issue.1, pp.85-88, 2010.
DOI : 10.1016/j.jcv.2009.11.014

P. Laurent, L. Roux, K. Grivard, P. Bertil, G. Naze et al., Development of a Sensitive Real-Time Reverse Transcriptase PCR Assay with an Internal Control to Detect and Quantify Chikungunya Virus, Clinical Chemistry, vol.53, issue.8, pp.1408-1414, 2007.
DOI : 10.1373/clinchem.2007.086595

URL : https://hal.archives-ouvertes.fr/hal-01187707

J. Lemant, V. Boisson, A. Winer, L. Thibault, H. Andre et al., Serious acute chikungunya virus infection requiring intensive care during the reunion island outbreak in 2005???2006*, Critical Care Medicine, vol.36, issue.9, pp.2536-2541, 2005.
DOI : 10.1097/CCM.0b013e318183f2d2

D. Lenschow, C. Lai, N. Frias-staheli, N. Giannakopoulos, A. Lutz et al., From the cover: IFN-stimulated gene 15 functions as a critical antiviral molecule against influenza, herpes, and Sindbis viruses, Proceedings of the National Academy of Sciences of the United States of America, pp.1371-1376, 2007.
DOI : 10.1073/pnas.0607038104

F. Lum, T. Teo, W. Lee, Y. Kam, L. Renia et al., An Essential Role of Antibodies in the Control of Chikungunya Virus Infection, The Journal of Immunology, vol.190, issue.12, pp.6295-6302, 2013.
DOI : 10.4049/jimmunol.1300304

M. Macdonald, E. Machlin, O. Albin, and D. Levy, The Zinc Finger Antiviral Protein Acts Synergistically with an Interferon-Induced Factor for Maximal Activity against Alphaviruses, Journal of Virology, vol.81, issue.24, pp.13509-13518, 2007.
DOI : 10.1128/JVI.00402-07

P. Mahendradas, S. Ranganna, R. Shetty, R. Balu, K. Narayana et al., Ocular Manifestations Associated with Chikungunya, Ophthalmology, vol.115, issue.2, pp.287-291, 2008.
DOI : 10.1016/j.ophtha.2007.03.085

K. Mallilankaraman, D. Shedlock, H. Bao, O. Kawalekar, P. Fagone et al., A DNA vaccine against chikungunya virus is protective in mice and induces neutralizing antibodies in mice and nonhuman primates Destructive arthritis in a patient with chikungunya virus infection with persistent specific IgM antibodies, PLoS Negl Trop Dis BMC Infect Dis, vol.5, issue.9, p.200, 2009.

S. Manimunda, P. Vijayachari, R. Uppoor, A. Sugunan, S. Singh et al., Clinical progression of chikungunya fever during acute and chronic arthritic stages and the changes in joint morphology as revealed by imaging, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.104, issue.6, pp.392-399, 2010.
DOI : 10.1016/j.trstmh.2010.01.011

C. Marimoutou, J. Ferraro, E. Javelle, X. Deparis, and F. Simon, Chikungunya infection: self-reported rheumatic morbidity and impaired quality of life persist 6 years later, Clinical Microbiology and Infection, vol.21, issue.7, 2015.
DOI : 10.1016/j.cmi.2015.02.024

J. Mathews, J. Roehrig, and D. Trent, Role of complement and the Fc portion of immunoglobulin G in immunity to Venezuelan equine encephalomyelitis virus infection with glycoprotein-specific monoclonal antibodies, J Virol, vol.55, pp.594-600, 1985.

D. Mavalankar, P. Shastri, and P. Raman, Chikungunya epidemic in India: a major public-health disaster, The Lancet Infectious Diseases, vol.7, issue.5, pp.306-307, 2007.
DOI : 10.1016/S1473-3099(07)70091-9

D. Mavalankar, P. Shastri, T. Bandyopadhyay, J. Parmar, and K. Ramani, Increased Mortality Rate Associated with Chikungunya Epidemic, Ahmedabad, India, Emerging Infectious Diseases, vol.14, issue.3, pp.412-415, 2008.
DOI : 10.3201/eid1403.070720

I. Messaoudi, J. Vomaske, T. Totonchy, C. Kreklywich, K. Haberthur et al., Chikungunya Virus Infection Results in Higher and Persistent Viral Replication in Aged Rhesus Macaques Due to Defects in Anti-Viral Immunity, PLoS Neglected Tropical Diseases, vol.83, issue.7, pp.2343-81, 2013.
DOI : 10.1371/journal.pntd.0002343.t001

A. Milner and I. Marshall, Pathogenesis of in utero infections with abortogenic and non-abortogenic alphaviruses in mice, J Virol, vol.50, pp.66-72, 1984.

J. Miner, A. Yeang, H. Fox, J. Taffner, S. Malkova et al., Brief Report: Chikungunya Viral Arthritis in the United States: A Mimic of Seronegative Rheumatoid Arthritis, Arthritis & Rheumatology, vol.120, issue.63, pp.1214-1220, 2015.
DOI : 10.1002/art.39027

M. Zim, M. Sam, I. Omar, S. Chan, Y. Abubakar et al., Chikungunya infection in Malaysia: comparison with dengue infection in adults and predictors of persistent arthralgia, J Clin Virol, vol.56, pp.141-145, 2013.

M. Moro, E. Grilli, A. Corvetta, G. Silvi, R. Angelini et al., Long-term chikungunya infection clinical manifestations after an outbreak in Italy: A prognostic cohort study, Journal of Infection, vol.65, issue.2, pp.165-172, 2012.
DOI : 10.1016/j.jinf.2012.04.005

T. Morrison, A. Whitmore, R. Shabman, B. Lidbury, S. Mahalingam et al., Characterization of Ross River Virus Tropism and Virus-Induced Inflammation in a Mouse Model of Viral Arthritis and Myositis, Journal of Virology, vol.80, issue.2, pp.737-749, 2006.
DOI : 10.1128/JVI.80.2.737-749.2006

T. Morrison, L. Oko, S. Montgomery, A. Whitmore, A. Lotstein et al., A Mouse Model of Chikungunya Virus???Induced Musculoskeletal Inflammatory Disease, The American Journal of Pathology, vol.178, issue.1, pp.32-40, 2011.
DOI : 10.1016/j.ajpath.2010.11.018

T. Morrison, Reemergence of Chikungunya Virus, Journal of Virology, vol.88, issue.20, pp.11644-11647, 2014.
DOI : 10.1128/JVI.01432-14

H. Nakaya, J. Gardner, Y. Poo, L. Major, B. Pulendran et al., Gene profiling of Chikungunya virus arthritis in a mouse model reveals significant overlap with rheumatoid arthritis, Arthritis & Rheumatism, vol.43, issue.1, pp.3553-3563, 2012.
DOI : 10.1002/art.34631

G. Narsimulu and N. Prabhu, Post-chikungunya chronic arthritis, J Assoc Physicians India, vol.59, p.81, 2011.

L. Ng, A. Chow, Y. Sun, D. Kwek, P. Lim et al., IL-1??, IL-6, and RANTES as Biomarkers of Chikungunya Severity, PLoS ONE, vol.8, issue.6, pp.4261-91183, 2009.
DOI : 10.1371/journal.pone.0004261.s003

S. Ozden, M. Huerre, J. Riviere, L. Coffey, P. Afonso et al., Human muscle satellite cells as targets of Chikungunya virus infection Development of a highly protective combination monoclonal antibody therapy against Chikungunya virus, PLoS One PLoS Pathog, vol.2, issue.9, pp.1003312-94, 2007.

N. Palha, F. Guivel-benhassine, V. Briolat, G. Lutfalla, M. Sourisseau et al., Real-Time Whole-Body Visualization of Chikungunya Virus Infection and Host Interferon Response in Zebrafish, Chikungunya fever in travelers returning to Europe from the Indian Ocean region, pp.416-422, 2006.
DOI : 10.1371/journal.ppat.1003619.s004

URL : https://hal.archives-ouvertes.fr/pasteur-01109454

P. Parola, X. De-lamballerie, J. J. Rovery, C. Vaillant, V. Minodier et al., Novel Chikungunya Virus Variant in Travelers Returning from Indian Ocean Islands, Emerging Infectious Diseases, vol.12, issue.10, pp.1493-1499, 2006.
DOI : 10.3201/eid1210.060610

C. Partidos, J. Weger, J. Brewoo, R. Seymour, E. Borland et al., Probing the attenuation and protective efficacy of a candidate chikungunya virus vaccine in mice with compromised interferon (IFN) signaling, Vaccine, vol.29, issue.16, pp.3067-3073, 2011.
DOI : 10.1016/j.vaccine.2011.01.076

G. Pialoux, B. Gauzere, S. Jaureguiberry, and M. Strobel, Chikungunya, an epidemic arbovirosis, The Lancet Infectious Diseases, vol.7, issue.5, pp.319-327, 2007.
DOI : 10.1016/S1473-3099(07)70107-X

Y. Poo, H. Nakaya, J. Gardner, T. Larcher, W. Schroder et al., CCR2 Deficiency Promotes Exacerbated Chronic Erosive Neutrophil-Dominated Chikungunya Virus Arthritis, Journal of Virology, vol.88, issue.12, pp.6862-6872, 2014.
DOI : 10.1128/JVI.03364-13

URL : https://hal.archives-ouvertes.fr/hal-01222894

Y. Poo, P. Rudd, J. Gardner, J. Wilson, T. Larcher et al., Multiple Immune Factors Are Involved in Controlling Acute and Chronic Chikungunya Virus Infection, PLoS Neglected Tropical Diseases, vol.149, issue.12, p.3354, 2014.
DOI : 10.1371/journal.pntd.0003354.s001

B. Queyriaux, F. Simon, M. Grandadam, R. Michel, H. Tolou et al., Clinical burden of chikungunya virus infection, The Lancet Infectious Diseases, vol.8, issue.1, pp.2-3, 2008.
DOI : 10.1016/S1473-3099(07)70294-3

S. Rajapakse, R. C. Rajapakse, and A. , Atypical manifestations of chikungunya infection, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.104, issue.2, pp.89-96, 2010.
DOI : 10.1016/j.trstmh.2009.07.031

D. Ramful, M. Carbonnier, M. Pasquet, B. Bouhmani, J. Ghazouani et al., Mother-to-Child Transmission of Chikungunya Virus Infection, The Pediatric Infectious Disease Journal, vol.26, issue.9, pp.811-815, 2007.
DOI : 10.1097/INF.0b013e3180616d4f

S. M. Rampal and H. Meena, Neurological complications in Chikungunya fever, J Assoc Physicians India, vol.55, pp.765-769, 2007.

V. Reddy, R. Mani, A. Desai, and V. Ravi, Correlation of plasma viral loads and presence of Chikungunya IgM antibodies with cytokine/chemokine levels during acute Chikungunya virus infection, Journal of Medical Virology, vol.227, issue.8, pp.1393-1401, 2014.
DOI : 10.1002/jmv.23875

P. Roques and G. Gras, Chikungunya Fever: Focus on Peripheral Markers of Pathogenesis, Journal of Infectious Diseases, vol.203, issue.2, pp.141-143, 2011.
DOI : 10.1093/infdis/jiq026

V. Rosario, R. Munoz-louis, T. Valdez, S. Adames, J. Medrano et al., Chikungunya infection in the general population and in patients with rheumatoid arthritis on biological therapy, Clinical Rheumatology, vol.18, issue.6, 2015.
DOI : 10.1007/s10067-015-2979-x

P. Rudd, J. Wilson, J. Gardner, T. Larcher, C. Babarit et al., Interferon Response Factors 3 and 7 Protect against Chikungunya Virus Hemorrhagic Fever and Shock, Journal of Virology, vol.86, issue.18, pp.9888-9898
DOI : 10.1128/JVI.00956-12

URL : https://hal.archives-ouvertes.fr/hal-01191139

N. Rulli, M. Rolph, A. Srikiatkhachorn, S. Anantapreecha, A. Guglielmotti et al., Protection From Arthritis and Myositis in a Mouse Model of Acute Chikungunya Virus Disease by Bindarit, an Inhibitor of Monocyte Chemotactic Protein-1 Synthesis, Journal of Infectious Diseases, vol.204, issue.7, pp.1026-1030, 2011.
DOI : 10.1093/infdis/jir470

K. Ryman, W. Klimstra, K. Nguyen, C. Biron, and R. Johnston, Alpha/Beta Interferon Protects Adult Mice from Fatal Sindbis Virus Infection and Is an Important Determinant of Cell and Tissue Tropism, Journal of Virology, vol.74, issue.7, pp.3366-3378, 2000.
DOI : 10.1128/JVI.74.7.3366-3378.2000

C. Schilte, T. Couderc, F. Chretien, M. Sourisseau, N. Gangneux et al., Type I IFN controls chikungunya virus via its action on nonhematopoietic cells, The Journal of Experimental Medicine, vol.58, issue.2, pp.429-442, 2010.
DOI : 10.1038/77553

URL : https://hal.archives-ouvertes.fr/pasteur-00458108

C. Schilte, M. Buckwalter, M. Laird, M. Diamond, O. Schwartz et al., Cutting Edge: Independent Roles for IRF-3 and IRF-7 in Hematopoietic and Nonhematopoietic Cells during Host Response to Chikungunya Infection, The Journal of Immunology, vol.188, issue.7, pp.2967-2971, 2012.
DOI : 10.4049/jimmunol.1103185

URL : https://hal.archives-ouvertes.fr/pasteur-01372485

C. Schilte, F. Staikowsky, T. Couderc, Y. Madec, F. Carpentier et al., Chikungunya Virus-associated Long-term Arthralgia: A 36-month Prospective Longitudinal Study, PLoS Neglected Tropical Diseases, vol.77, issue.Pt 3, p.2137, 2013.
DOI : 10.1371/journal.pntd.0002137.s005

URL : https://hal.archives-ouvertes.fr/hal-01189712

A. Schmaljohn, K. Kokubun, and G. Cole, Protective monoclonal antibodies define maturational and pH-dependent antigenic changes in sindbis virus E1 glycoprotein, Virology, vol.130, issue.1, pp.144-154, 1983.
DOI : 10.1016/0042-6822(83)90124-1

I. Schuffenecker, I. Iteman, A. Michault, S. Murri, L. Frangeul et al., Genome Microevolution of Chikungunya Viruses Causing the Indian Ocean Outbreak, PLoS Medicine, vol.105, issue.7, p.263, 2006.
DOI : 10.1371/journal.pmed.0030263.st005

O. Schwartz and M. Albert, Biology and pathogenesis of chikungunya virus, Nature Reviews Microbiology, vol.81, issue.7, pp.491-500, 2010.
DOI : 10.1038/nrmicro2368

URL : https://hal.archives-ouvertes.fr/pasteur-00498486

D. Scott, F. Wolfe, and T. Huizinga, Rheumatoid arthritis, The Lancet, vol.376, issue.9746, pp.1094-1108, 2010.
DOI : 10.1016/S0140-6736(10)60826-4

S. Selvarajah, N. Sexton, K. Kahle, R. Fong, K. Mattia et al., A Neutralizing Monoclonal Antibody Targeting the Acid-Sensitive Region in Chikungunya Virus E2 Protects from Disease, PLoS Neglected Tropical Diseases, vol.175, issue.9, p.2423, 2013.
DOI : 10.1371/journal.pntd.0002423.s003

F. Simon, P. Parola, M. Grandadam, S. Fourcade, M. Oliver et al., Chikungunya Infection, Medicine, vol.86, issue.3, pp.123-137, 2007.
DOI : 10.1097/MD/0b013e31806010a5

URL : http://doi.org/10.1097/md/0b013e31806010a5

S. Singh, S. Manimunda, A. Sugunan, . Sahina, and P. Vijayachari, Four cases of acute flaccid paralysis associated with chikungunya virus infection, Epidemiology and Infection, vol.368, issue.09, pp.1277-1280, 2008.
DOI : 10.1371/journal.pmed.0030263

D. Sissoko, D. Malvy, K. Ezzedine, R. P. Moscetti, F. Ledrans et al., Post-Epidemic Chikungunya Disease on Reunion Island: Course of Rheumatic Manifestations and Associated Factors over a 15-Month Period, PLoS Neglected Tropical Diseases, vol.86, issue.3, p.389, 2009.
DOI : 10.1371/journal.pntd.0000389.s001

D. Sissoko, K. Ezzedine, A. Moendandze, C. Giry, R. P. Malvy et al., Field evaluation of clinical features during chikungunya outbreak in Mayotte, Trop Med Int Health, vol.15, pp.600-607, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01274624

M. Sourisseau, C. Schilte, N. Casartelli, C. Trouillet, F. Guivel-benhassine et al., Characterization of Reemerging Chikungunya Virus, PLoS Pathogens, vol.4, issue.6, p.89, 2007.
DOI : 0889-2229(1988)004[0441:ARASTF]2.0.CO;2

URL : https://hal.archives-ouvertes.fr/pasteur-00161827

F. Staikowsky, F. Talarmin, P. Grivard, A. Souab, I. Schuffenecker et al., Prospective Study of Chikungunya Virus Acute Infection in the Island of La R??union during the 2005???2006 Outbreak, PLoS ONE, vol.4, issue.10, p.7603, 2009.
DOI : 10.1371/journal.pone.0007603.t006

J. Staples, R. Breiman, and A. Powers, Chikungunya Fever: An Epidemiological Review of a Re???Emerging Infectious Disease, Clinical Infectious Diseases, vol.49, issue.6, pp.942-948, 2009.
DOI : 10.1086/605496

A. Suhrbier, M. Jaffar-bandjee, and P. Gasque, Arthritogenic alphaviruses???an overview, Nature Reviews Rheumatology, vol.28, issue.7, pp.420-429, 2012.
DOI : 10.1038/nrrheum.2012.64

URL : https://hal.archives-ouvertes.fr/hal-01274606

B. Tandale, P. Sathe, V. Arankalle, R. Wadia, R. Kulkarni et al., Systemic involvements and fatalities during Chikungunya epidemic in India, 2006, Journal of Clinical Virology, vol.46, issue.2, pp.145-149, 2006.
DOI : 10.1016/j.jcv.2009.06.027

T. Teng, S. Foo, D. Simamarta, F. Lum, T. Teo et al., Viperin restricts chikungunya virus replication and pathology, Journal of Clinical Investigation, vol.122, issue.12, pp.4447-4460, 2012.
DOI : 10.1172/JCI63120DS1

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3533538

T. Teo, F. Lum, W. Lee, and L. Ng, Mouse models for Chikungunya virus: deciphering immune mechanisms responsible for disease and pathology, Immunologic Research, vol.19, issue.Suppl 1, pp.136-147, 2012.
DOI : 10.1007/s12026-012-8266-x

T. Teo, F. Lum, C. Claser, V. Lulla, A. Lulla et al., A Pathogenic Role for CD4+ T Cells during Chikungunya Virus Infection in Mice, The Journal of Immunology, vol.190, issue.1, pp.259-269, 2013.
DOI : 10.4049/jimmunol.1202177

T. Teo, Z. Her, J. Tan, F. Lum, W. Lee et al., ABSTRACT, Journal of Virology, vol.89, issue.15, 2015.
DOI : 10.1128/JVI.00909-15

S. Thiberville, V. Boisson, J. Gaudart, F. Simon, A. Flahault et al., Chikungunya Fever: A Clinical and Virological Investigation of Outpatients on Reunion Island, South-West Indian Ocean, PLoS Neglected Tropical Diseases, vol.196, issue.1, p.2004, 2013.
DOI : 10.1371/journal.pntd.0002004.s003

URL : https://hal.archives-ouvertes.fr/hal-01307675

S. Thiberville, N. Moyen, L. Dupuis-maguiraga, A. Nougairede, E. Gould et al., Chikungunya fever: Epidemiology, clinical syndrome, pathogenesis and therapy, Antiviral Research, vol.99, issue.3, pp.345-370, 2013.
DOI : 10.1016/j.antiviral.2013.06.009

V. Thon-hon, M. Denizot, G. Li-pat-yuen, C. Giry, M. Jaffar-bandjee et al., Deciphering the differential response of two human fibroblast cell lines following Chikungunya virus infection, Virology Journal, vol.9, issue.1, p.213, 2012.
DOI : 10.1093/nar/29.9.e45

URL : https://hal.archives-ouvertes.fr/hal-01274604

J. Valamparampil, S. Chirakkarot, S. Letha, C. Jayakumar, and K. Gopinathan, Clinical profile of Chikungunya in infants, The Indian Journal of Pediatrics, vol.7, issue.2, pp.151-155, 2009.
DOI : 10.1007/s12098-009-0045-x

A. Venkatesan, A. Tunkel, K. Bloch, A. Lauring, J. Sejvar et al., Case Definitions, Diagnostic Algorithms, and Priorities in Encephalitis: Consensus Statement of the International Encephalitis Consortium, Clinical Infectious Diseases, vol.57, issue.8, pp.1114-1128, 2013.
DOI : 10.1093/cid/cit458

A. Venugopalan, R. Ghorpade, and A. Chopra, Cytokines in Acute Chikungunya, PLoS ONE, vol.66, issue.2, p.111305, 2014.
DOI : 10.1371/journal.pone.0111305.s002

R. Wang, J. Wang, D. Acharya, A. Paul, F. Bai et al., Antiviral Responses in Mouse Embryonic Stem Cells: DIFFERENTIAL DEVELOPMENT OF CELLULAR MECHANISMS IN TYPE I INTERFERON PRODUCTION AND RESPONSE, Journal of Biological Chemistry, vol.289, issue.36, pp.25186-25198, 2014.
DOI : 10.1074/jbc.M113.537746

N. Wauquier, P. Becquart, D. Nkoghe, C. Padilla, A. Ndjoyi-mbiguino et al., The Acute Phase of Chikungunya Virus Infection in Humans Is Associated With Strong Innate Immunity and T CD8 Cell Activation, Journal of Infectious Diseases, vol.204, issue.1, pp.115-123, 2011.
DOI : 10.1093/infdis/jiq006

S. Weaver and N. Forrester, Chikungunya: Evolutionary history and recent epidemic spread, Antiviral Research, vol.120, pp.32-39, 2015.
DOI : 10.1016/j.antiviral.2015.04.016

S. Weaver and M. Lecuit, Chikungunya virus and the global spread of a mosquitoborne disease, N Engl J Med, vol.372, pp.1231-1239, 2015.

S. Werneke, C. Schilte, A. Rohatgi, K. Monte, A. Michault et al., ISG15 Is Critical in the Control of Chikungunya Virus Infection Independent of UbE1L Mediated Conjugation, PLoS Pathogens, vol.9, issue.10, p.1002322, 2011.
DOI : 10.1371/journal.ppat.1002322.s006

URL : https://hal.archives-ouvertes.fr/pasteur-01402061

L. White, T. Sali, D. Alvarado, E. Gatti, P. Pierre et al., Chikungunya Virus Induces IPS-1-Dependent Innate Immune Activation and Protein Kinase R-Independent Translational Shutoff, Journal of Virology, vol.85, issue.1, pp.606-620, 2011.
DOI : 10.1128/JVI.00767-10

A. Wielanek, J. Monredon, M. Amrani, J. Roger, and J. Serveaux, GUILLAIN-BARRE SYNDROME COMPLICATING A CHIKUNGUNYA VIRUS INFECTION, Neurology, vol.69, issue.22, pp.2105-2107, 2007.
DOI : 10.1212/01.wnl.0000277267.07220.88

M. Win, A. Chow, F. Dimatatac, C. Go, and Y. Leo, Chikungunya fever in Singapore: Acute clinical and laboratory features, and factors associated with persistent arthralgia, Journal of Clinical Virology, vol.49, issue.2, pp.111-114, 2010.
DOI : 10.1016/j.jcv.2010.07.004

J. Wu, J. Wang, M. Li, Y. Yang, B. Wang et al., Small molecule inhibitors of histone acetyltransferase Tip60, Bioorganic Chemistry, vol.39, issue.1, pp.53-58, 2011.
DOI : 10.1016/j.bioorg.2010.11.003

M. Zacks and S. Paessler, Encephalitic alphaviruses, Veterinary Microbiology, vol.140, issue.3-4, pp.281-286, 2010.
DOI : 10.1016/j.vetmic.2009.08.023

F. Zare, M. Bokarewa, N. Nenonen, T. Bergstrom, L. Alexopoulou et al., Arthritogenic Properties of Double-Stranded (Viral) RNA, The Journal of Immunology, vol.172, issue.9, pp.5656-5663, 2004.
DOI : 10.4049/jimmunol.172.9.5656

Y. Zhang, C. Burke, K. Ryman, and W. Klimstra, Identification and Characterization of Interferon-Induced Proteins That Inhibit Alphavirus Replication, Journal of Virology, vol.81, issue.20, pp.11246-11255, 2007.
DOI : 10.1128/JVI.01282-07

S. Ziegler, L. Lu, A. Da-rosa, S. Xiao, and R. Tesh, An animal model for studying the pathogenesis of chikungunya virus infection, Am J Trop Med Hyg, vol.79, pp.133-139, 2008.