Early Strains of Multidrug-Resistant Salmonella enterica Serovar Kentucky Sequence Type 198 from Southeast Asia Harbor Salmonella Genomic Island 1-J Variants with a Novel Insertion Sequence

Simon Le Hello (1) , François-Xavier Weill (1) , Véronique Guibert (1) , Karine Praud (2) , Axel Cloeckaert (2) , Benoît Doublet (2)

1 CNR-ESS - Centre National de Référence - National Reference Center Escherichia coli, Shigella et Salmonella
2 UMR ISP - Infectiologie et Santé Publique

c Salmonella genomic island 1 (SGI1) is a 43-kb integrative mobilizable element that harbors a great diversity of multidrug resis-tance gene clusters described in numerous Salmonella enterica serovars and also in Proteus mirabilis. The majority of SGI1 vari-ants contain an In104-derivative complex class 1 integron inserted between resolvase gene res and open reading frame (ORF) S044 in SGI1. Recently, the international spread of ciprofloxacin-resistant S. enterica serovar Kentucky sequence type 198 (ST198) containing SGI1-K variants has been reported. A retrospective study was undertaken to characterize ST198 S. Kentucky strains isolated before the spread of the epidemic ST198-SGI1-K population in Africa and the Middle East. Here, we character-ized 12 ST198 S. Kentucky strains isolated between 1969 and 1999, mainly from humans returning from Southeast Asia (n ‫؍‬ 10 strains) or Israel (n ‫؍‬ 1 strain) or from meat in Egypt (n ‫؍‬ 1 strain). All these ST198 S. Kentucky strains did not belong to the XbaI pulsotype X1 associated with the African epidemic clone but to pulsotype X2. SGI1-J subgroup variants containing differ-ent complex integrons with a partial transposition module and inserted within ORF S023 of SGI1 were detected in six strains. The SGI1-J4 variant containing a partially deleted class 1 integron and thus showing a narrow resistance phenotype to sulfon-amides was identified in two epidemiologically unrelated strains from Indonesia. The four remaining strains harbored a novel SGI1-J variant, named SGI1-J6, which contained aadA2, floR2, tetR(G)-tetA(G), and sul1 resistance genes within its complex in-tegron. Moreover, in all these S. Kentucky isolates, a novel insertion sequence related to the IS630 family and named ISSen5 was found inserted upstream of the SGI1 complex integron in ORF S023. Thus, two subpopulations of S. Kentucky ST198 indepen-dently and exclusively acquired the SGI1 during the 1980s and 1990s. Unlike the ST198-X1 African epidemic subpopulation, the ST198-X2 subpopulation mainly from Asia harbors variants of the SGI1-J subgroup that are encountered mainly in the Far East, as previously described for S. enterica serovars Emek and Virchow.

Domaines: Santé publique et épidémiologie

Simon Le Hello, François-Xavier Weill, Véronique Guibert, Karine Praud, Axel Cloeckaert, et al.. Early Strains of Multidrug-Resistant Salmonella enterica Serovar Kentucky Sequence Type 198 from Southeast Asia Harbor Salmonella Genomic Island 1-J Variants with a Novel Insertion Sequence. Antimicrobial Agents and Chemotherapy, 2012, 56 (10), pp.5096-102. ⟨10.1128/AAC.00732-12⟩. ⟨pasteur-01116037⟩