P. J. Sansonetti, Shigellosis: An Old Disease in New Clothes?, PLoS Medicine, vol.23, issue.9, p.354, 2006.
DOI : 1606-0997(2005)023[0259:RFFMDT]2.0.CO;2

URL : https://hal.archives-ouvertes.fr/pasteur-00137577

G. Prosseda, M. Falconi, M. Nicoletti, M. Casalino, G. Micheli et al., Histone-like proteins and the Shigella invasivity regulon, Research in Microbiology, vol.153, issue.7, pp.461-468, 2002.
DOI : 10.1016/S0923-2508(02)01346-3

C. Parsot, pathogenicity factors, FEMS Microbiology Letters, vol.252, issue.1, pp.11-18, 2005.
DOI : 10.1016/j.femsle.2005.08.046

M. L. Bernardini, J. Mounier, H. Hauteville, M. Coquis-rondon, and P. J. Sansonetti, Identification of icsA, a plasmid locus of Shigella flexneri that governs bacterial intra- and intercellular spread through interaction with F-actin., Proc. Natl Acad. Sci. USA, pp.3867-3871, 1989.
DOI : 10.1073/pnas.86.10.3867

L. D. Brandon, N. Goehring, A. Janakiraman, A. W. Yan, T. Wu et al., IcsA, a polarly localized autotransporter with an atypical signal peptide, uses the Sec apparatus for secretion, although the Sec apparatus is circumferentially distributed, Molecular Microbiology, vol.97, issue.1, pp.45-60, 2003.
DOI : 10.1046/j.1365-2958.2003.03674.x

T. Sakai, C. Sasakawa, and M. Yoshikawa, Expression of four virulence antigens of Shigella flexneri is positively regulated at the transcriptional level by the 30 kilo Dalton virF protein, Molecular Microbiology, vol.48, issue.5, pp.589-597, 1988.
DOI : 10.1007/BF00332530

L. Gall, T. Mavris, M. Martino, M. M. Bernardini, M. L. Denamur et al., Analysis of virulence plasmid gene expression defines three classes of effectors in the type III secretion system of Shigella flexneri, Microbiology, vol.151, issue.3, pp.951-962, 2005.
DOI : 10.1099/mic.0.27639-0

O. ¨. Schroder and R. Wagner, The Bacterial Regulatory Protein H-NS A Versatile Modulator of Nucleic Acid Structures, Biological Chemistry, vol.383, issue.6, pp.945-960, 2002.
DOI : 10.1515/BC.2002.101

C. J. Dorman, H-NS: a universal regulator for a dynamic genome, Nature Reviews Microbiology, vol.90, issue.5, pp.391-400, 2004.
DOI : 10.1016/j.mib.2004.02.001

F. C. Fang and S. Rimsky, New insights into transcriptional regulation by H-NS, Current Opinion in Microbiology, vol.11, issue.2, pp.113-120, 2008.
DOI : 10.1016/j.mib.2008.02.011

URL : https://hal.archives-ouvertes.fr/hal-00277576

B. Dagberg and B. E. Uhlin, Regulation of virulence-associated plasmid genes in enteroinvasive Escherichia coli., Journal of Bacteriology, vol.174, issue.23, pp.7607-7612, 1992.
DOI : 10.1128/jb.174.23.7606-7612.1992

G. Prosseda, P. A. Fradiani, D. Lorenzo, M. Falconi, M. Micheli et al., A role for H-NS in the regulation of the virF gene of Shigella and enteroinvasive Escherichia coli, Research in Microbiology, vol.149, issue.1, pp.15-25, 1998.
DOI : 10.1016/S0923-2508(97)83619-4

T. Tobe, M. Yoshikawa, T. Mizuno, and C. Sasakawa, Transcriptional control of the invasion regulatory gene virB of Shigella flexneri: activation by virF and repression by H-NS., Journal of Bacteriology, vol.175, issue.19, 1993.
DOI : 10.1128/jb.175.19.6142-6149.1993

M. Falconi, B. Colonna, G. Prosseda, G. Micheli, and C. O. Gualerzi, Thermoregulation of Shigella and Escherichia coli EIEC pathogenicity. A temperature-dependent structural transition of DNA modulates accessibility of virF promoter to transcriptional repressor H-NS, The EMBO Journal, vol.12, issue.23, pp.7033-7043, 1998.
DOI : 10.1093/emboj/17.23.7033

C. Beloin and C. J. Dorman, An extended role for the nucleoid structuring protein H-NS in the virulence gene regulatory cascade of Shigella flexneri, Molecular Microbiology, vol.12, issue.3, pp.825-838, 2003.
DOI : 10.1046/j.1365-2958.2003.03347.x

G. Prosseda, M. Falconi, M. Giangrossi, C. O. Gualerzi, G. Micheli et al., The virF promoter in Shigella: more than just a curved DNA stretch, Molecular Microbiology, vol.12, issue.2, pp.523-537, 2004.
DOI : 10.1046/j.1365-2958.2003.03848.x

M. Giangrossi, G. Prosseda, C. N. Tran, A. Brandi, B. Colonna et al., A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri, Nucleic Acids Research, vol.38, issue.10, pp.3362-3375, 2010.
DOI : 10.1093/nar/gkq025

P. Romby, F. Vandenesch, and E. G. Wagner, The role of RNAs in the regulation of virulence-gene expression, Current Opinion in Microbiology, vol.9, issue.2, pp.229-236, 2006.
DOI : 10.1016/j.mib.2006.02.005

URL : https://hal.archives-ouvertes.fr/hal-00094433

A. Toledo-arana, F. Repoila, and P. Cossart, Small noncoding RNAs controlling pathogenesis, Current Opinion in Microbiology, vol.10, issue.2, pp.182-188, 2007.
DOI : 10.1016/j.mib.2007.03.004

S. Altuvia, Identification of bacterial small non-coding RNAs: experimental approaches, Current Opinion in Microbiology, vol.10, issue.3, pp.257-261, 2007.
DOI : 10.1016/j.mib.2007.05.003

K. Papenfort and J. Vogel, Regulatory RNA in Bacterial Pathogens, Cell Host & Microbe, vol.8, issue.1, pp.116-127, 2010.
DOI : 10.1016/j.chom.2010.06.008

S. Brantl, Regulatory mechanisms employed by cis-encoded antisense RNAs, Current Opinion in Microbiology, vol.10, issue.2, pp.102-109, 2007.
DOI : 10.1016/j.mib.2007.03.012

L. S. Waters and G. Storz, Regulatory RNAs in Bacteria, Cell, vol.136, issue.4, pp.615-628, 2009.
DOI : 10.1016/j.cell.2009.01.043

F. Repoila and F. Darfeuille, Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects, Biology of the Cell, vol.17, issue.2, pp.117-131, 2009.
DOI : 10.1042/BC20070137

T. Sakai, C. Sasakawa, S. Makino, K. Kamata, and M. Yoshikawa, Molecular cloning of a genetic determinant for Congo red binding ability which is essential for the virulence of Shigella flexneri, Infect. Immun, vol.51, pp.476-482, 1986.

P. Bertin, E. Terao, E. H. Lee, P. Lejeune, C. Colson et al., The H-NS protein is involved in the biogenesis of flagella in Escherichia coli., Journal of Bacteriology, vol.176, issue.17, pp.5537-5540, 1994.
DOI : 10.1128/jb.176.17.5537-5540.1994

L. Teana, A. Falconi, M. Scarlato, V. Lammi, M. Pon et al., Characterization of the structural genes for the DNA-binding protein H-NS in Enterobacteriaceae, FEBS Letters, vol.143, issue.1, pp.34-38, 1989.
DOI : 10.1016/0014-5793(89)81156-1

A. Brandi, P. Pietroni, C. O. Gualerzi, and C. L. Pon, Post-transcriptional regulation of CspA expression in Escherichia coli, Molecular Microbiology, vol.19, issue.2, pp.231-240, 1996.
DOI : 10.1046/j.1365-2958.1996.362897.x

M. Giangrossi, S. Zattoni, A. Tramonti, D. De-biase, and M. Falconi, Antagonistic role of H-NS and GadX in the, Nucleic Acids Research, vol.39, issue.18, p.8133, 2005.

C. J. Dorman and M. E. Porter, The Shigella virulence gene regulatory cascade: a paradigm of bacterial gene control mechanisms, Molecular Microbiology, vol.29, issue.3, pp.677-684, 1998.
DOI : 10.1016/S0378-1097(98)00138-4

M. C. Lett, C. Sasakawa, N. Okada, T. Sakai, S. Makino et al., virG, a plasmid-coded virulence gene of Shigella flexneri: identification of the virG protein and determination of the complete coding sequence., Journal of Bacteriology, vol.171, issue.1, pp.353-359, 1989.
DOI : 10.1128/jb.171.1.353-359.1989

F. Hommais, E. Krin, C. Laurent-winter, O. Soutourina, A. Malpertuy et al., Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS, Molecular Microbiology, vol.15, issue.1, 2001.
DOI : 10.1046/j.1365-2958.2001.02358.x

S. Stella, M. Falconi, M. Lammi, C. O. Gualerzi, and C. L. Pon, Environmental Control of the In vivo Oligomerization of Nucleoid Protein H-NS, Journal of Molecular Biology, vol.355, issue.2, pp.169-174, 2006.
DOI : 10.1016/j.jmb.2005.10.034

W. W. Navarre, M. Mcclelland, S. J. Libby, and F. C. Fang, Silencing of xenogeneic DNA by H-NS--facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA, Genes & Development, vol.21, issue.12, pp.1456-1471, 2007.
DOI : 10.1101/gad.1543107

T. Atlung and H. Ingmer, H-NS: a modulator of environmentally regulated gene expression, Molecular Microbiology, vol.24, issue.1, pp.7-17, 1997.
DOI : 10.1046/j.1365-2958.1997.3151679.x

R. A. Lease and M. Belfort, A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures, Proc. Natl Acad. Sci. USA, pp.9919-9924, 2000.
DOI : 10.1073/pnas.170281497

D. Sledjeski and S. Gottesman, A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli., Proc. Natl Acad. Sci. USA, 1995.
DOI : 10.1073/pnas.92.6.2003

H. S. Park, Y. Ostberg, J. Johansson, E. G. Wagner, and B. E. Uhlin, Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites, Genes & Development, vol.24, issue.13, pp.1345-1350, 2010.
DOI : 10.1101/gad.576310

H. Yamada, S. Muramatsu, and T. Mizuno, An Escherichia coli Protein That Preferentially Binds to Sharply Curved DNA1, The Journal of Biochemistry, vol.108, issue.3, pp.420-425, 1990.
DOI : 10.1093/oxfordjournals.jbchem.a123216

A. S. Ono, M. D. Goldberg, T. Olsson, D. Esposito, J. C. Hinton et al., H-NS is a part of a thermally controlled mechanism for bacterial gene regulation, Biochemical Journal, vol.391, issue.2, pp.203-213, 2005.
DOI : 10.1042/BJ20050453

D. M. Stoebel, A. Free, and C. J. Dorman, Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria, Microbiology, vol.154, issue.9, pp.2533-2545, 2008.
DOI : 10.1099/mic.0.2008/020693-0

R. R. Yu and V. J. Dirita, Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation, Molecular Microbiology, vol.43, issue.1, pp.119-134, 2002.
DOI : 10.1016/S0378-1097(97)00397-2

M. E. Porter, P. Mitchell, A. J. Roe, A. Free, D. G. Smith et al., Direct and indirect transcriptional activation of virulence genes by an AraC-like protein, PerA from enteropathogenic Escherichia coli, Molecular Microbiology, vol.148, issue.4, pp.1117-1133, 2004.
DOI : 10.1111/j.1365-2958.2004.04333.x

C. A. White-ziegler and T. R. Davis, K-12, Journal of Bacteriology, vol.191, issue.3, pp.1106-1110, 2009.
DOI : 10.1128/JB.00599-08

E. G. Wagner, S. Altuvia, and P. Romby, 12 Antisense RNAs in bacteria and their genetic elements, Adv. Genet, vol.46, pp.361-398, 2002.
DOI : 10.1016/S0065-2660(02)46013-0

M. Zuker, D. H. Mathews, and D. H. Turner, Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide in RNA biochemistry and biotechnology, NATO ASI Series, 1999.

J. H. Miller, A short course in bacterial genetics, 1992.

P. Wattiau and G. R. Cornellis, Identification of DNA sequences recognized by VirF, the transcriptional activator of the Yersinia yop regulon., Journal of Bacteriology, vol.176, issue.13, pp.3878-3884, 1994.
DOI : 10.1128/jb.176.13.3878-3884.1994

R. Schleif, AraC protein, regulation of the l-arabinose operon in Escherichia coli, and the light switch mechanism of AraC action, FEMS Microbiol. Rev, vol.43, pp.779-796, 2010.