Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program, American Medical Informatics Association Annual Symposium, AMIA'01, pp.17-21, 2001. ,
Bio-ontologies: current trends and future directions, Briefings in Bioinformatics, vol.7, issue.3, pp.256-274, 2006. ,
DOI : 10.1093/bib/bbl027
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847325
An Efficient Solution for Mapping Free Text to Ontology Terms, American Medical Informatics Association Symposium on Translational BioInformatics, AMIA-TBI'08, 2008. ,
The Rat Genome Database 2009: variation, ontologies and pathways, Nucleic Acids Research, vol.37, issue.Database, pp.37-744, 2009. ,
DOI : 10.1093/nar/gkn842
Automatic recognition of multi-word terms:. the C-value/NC-value method, International Journal on Digital Libraries, vol.3, issue.2, pp.115-130, 2000. ,
DOI : 10.1007/s007999900023
Terminizer ??? Assisting Mark-Up of Text Using Ontological Terms, 3rd International Biocuration Conference, 2009. ,
DOI : 10.1038/npre.2009.3128.1
Annotation for the Semantic Web, Frontiers in Artificial Intelligence and Applications, vol.96, 2003. ,
Essie: A Concept-based Search Engine for Structured Biomedical Text, Journal of the American Medical Informatics Association, vol.14, issue.3, pp.253-263, 2007. ,
DOI : 10.1197/jamia.M2233
Building a biomedical ontology recommender web service, Journal of Biomedical Semantics, vol.1, issue.Suppl 1, 2010. ,
DOI : 10.1038/nbt1346
URL : https://hal.archives-ouvertes.fr/hal-00489093
The Open Biomedical Annotator, American Medical Informatics Association Symposium on Translational BioInformatics, AMIA-TBI'09, pp.56-60, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00492024
Manual curation is not sufficient for annotation of genomic databases, Bioinformatics, vol.23, issue.13, pp.41-48, 2007. ,
Semantic Search, 12th International Conference on World Wide Web, WWW'03, pp.700-709, 2003. ,
A Comparative Evaluation of Full-text, Concept-based, and Context-sensitive Search, Journal of the American Medical Informatics Association, vol.14, issue.2, pp.164-174, 2007. ,
DOI : 10.1197/jamia.M1953
The Inevitable Application of Big Data to Health Care, JAMA, vol.309, issue.13, pp.1351-1352, 2013. ,
DOI : 10.1001/jama.2013.393
BioPortal: ontologies and integrated data resources at the click of a mouse, Nucleic Acids Research, vol.37, issue.Web Server, pp.37-170, 2009. ,
DOI : 10.1093/nar/gkp440
URL : https://hal.archives-ouvertes.fr/hal-00492020
Using multiterminology indexing for the assignment of MeSH descriptors to health resources in a French online catalogue, American Medical Informatics Association Annual Symposium, AMIA'08, pp.586-590, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00503262
Text processing through Web services: calling Whatizit, Bioinformatics, vol.24, issue.2, pp.296-298, 2008. ,
DOI : 10.1093/bioinformatics/btm557
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/24/2/296
Use and misuse of the gene ontology annotations, Nature Reviews Genetics, vol.57, issue.7, pp.509-515, 2008. ,
DOI : 10.1038/nrg2363
Biomedical ontologies: a functional perspective, Briefings in Bioinformatics, vol.9, issue.1, pp.75-90, 2008. ,
DOI : 10.1093/bib/bbm059
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications, Journal of the American Medical Informatics Association, vol.17, issue.5, pp.507-513, 2010. ,
DOI : 10.1136/jamia.2009.001560
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995668
Ontology-driven indexing of public datasets for translational bioinformatics, BMC Bioinformatics, vol.10, issue.Suppl 2, p.1, 2009. ,
DOI : 10.1186/1471-2105-10-S2-S1
URL : https://hal.archives-ouvertes.fr/hal-00492025
Semantator: Annotating Clinical Narratives with Semantic Web Ontologies In: AMIA Joint Summits on Translational Science, pp.20-29, 2012. ,
Ranking and scoring semantic document annotation, 2010 International Conference on Science and Social Research (CSSR 2010), pp.691-694, 2010. ,
DOI : 10.1109/CSSR.2010.5773870
Semantic annotation for knowledge management: Requirements and a survey of the state of the art, Web Semantics: Science, Services and Agents on the World Wide Web, vol.4, issue.1, pp.14-28, 2006. ,
DOI : 10.1016/j.websem.2005.10.002
Ranking Biomedical Annotations with Annotator?s Semantic Relevancy, Computational and Mathematical Methods in Medicine, p.11, 2014. ,
A Comparative Evaluation of Term Recognition Algorithms, 6th International Conference on Language Resources and Evaluation, LREC'08, pp.2108-2113, 2008. ,