Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.

David James Sherman 1, 2, 3, * Tiphaine Martin 1, 4 Macha Nikolski 1, 3 Cyril Cayla 3 Jean-Luc Souciet 5, 6 Pascal Durrens 1, 3
* Corresponding author
1 MAGNOME - Models and Algorithms for the Genome
INRIA Futurs, Université Sciences et Technologies - Bordeaux 1, École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB), CNRS - Centre National de la Recherche Scientifique : UMR5800
Abstract : The Genolevures online database (http://cbi.labri.fr/Genolevures/ and http://genolevures.org/) provides exploratory tools and curated data sets relative to nine complete and seven partial genome sequences determined and manually annotated by the Genolevures Consortium, to facilitate comparative genomic studies of Hemiascomycete yeasts. The 2008 update to the Genolevures database provides four new genomes in complete (subtelomere to subtelomere) chromosome sequences, 50 000 protein-coding and tRNA genes, and in silico analyses for each gene element. A key element is a novel classification of conserved multi-species protein families and their use in detecting synteny, gene fusions and other aspects of genome remodeling in evolution. Our purpose is to release high-quality curated data from complete genomes, with a focus on the relations between genes, genomes and proteins.
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https://hal.inria.fr/inria-00341578
Contributor : Pascal Durrens <>
Submitted on : Tuesday, November 25, 2008 - 3:02:50 PM
Last modification on : Monday, May 13, 2019 - 11:30:04 AM

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David James Sherman, Tiphaine Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, et al.. Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.. Nucleic Acids Research, Oxford University Press, 2009, pp.D550-D554. ⟨10.1093/nar/gkn859⟩. ⟨inria-00341578⟩

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