J. Werren, L. Baldo, and M. Clark, Wolbachia: master manipulators of invertebrate biology, Nature Reviews Microbiology, vol.12, issue.10, pp.741-751, 2008.
DOI : 10.1099/ijs.0.64515-0

D. Bouchon, R. Cordaux, and P. Grève, Feminizing Wolbachia and the evolution of sex determination in isopods, In Insect symbiosis. Boca Raton, vol.3, pp.273-294, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00345410

R. Cordaux, D. Bouchon, and P. Grève, The impact of endosymbionts on the evolution of host sex-determination mechanisms, Trends in Genetics, vol.27, issue.8, pp.332-341, 2011.
DOI : 10.1016/j.tig.2011.05.002

URL : https://hal.archives-ouvertes.fr/hal-00626381

I. Negri, M. Pellecchia, P. Grève, D. Daffonchio, C. Bandi et al., Sex and stripping, Communicative & Integrative Biology, vol.15, issue.2, pp.110-115, 2010.
DOI : 10.1098/rspb.2009.0287

URL : https://hal.archives-ouvertes.fr/hal-00551730

R. Cordaux, A. Michel-salzat, M. Frelon-raimond, T. Rigaud, and D. Bouchon, Evidence for a new feminizing Wolbachia strain in the isopod Armadillidium vulgare: evolutionary implications, Heredity, vol.93, issue.1, pp.78-84, 2004.
DOI : 10.1038/sj.hdy.6800482

URL : https://hal.archives-ouvertes.fr/hal-00121257

M. Lachat, Impact de deux souches de Wolbachia sur les traits d'histoire de vie de leurs hôtes Armadillidium vulgare, 2009.

J. Moreau, A. Bertin, Y. Caubet, and T. Rigaud, Sexual selection in an isopod with Wolbachia-induced sex reversal: males prefer real females, Journal of Evolutionary Biology, vol.4, issue.3, pp.388-394, 2001.
DOI : 10.1046/j.1365-2540.1999.00599.x

URL : https://hal.archives-ouvertes.fr/hal-00123775

T. Rigaud and J. Moreau, A cost of Wolbachia-induced sex reversal and female-biased sex ratios: decrease in female fertility after sperm depletion in a terrestrial isopod, Proceedings of the Royal Society B: Biological Sciences, vol.271, issue.1551, pp.1941-1946, 2004.
DOI : 10.1098/rspb.2004.2804

URL : https://hal.archives-ouvertes.fr/hal-00121262

M. Lachat, Y. Caubet, and D. Bouchon, Does Wolbachia influence survival in starved Armadillidium vulgare?, Proceedings of the International Symposium of Terrestrial Isopod Biology ISTIB 07, pp.125-130, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00347597

C. Braquart-varnier, M. Lachat, J. Herbinière, M. Johnson, Y. Caubet et al., Wolbachia Mediate Variation of Host Immunocompetence, PLoS ONE, vol.7, issue.5, p.3286, 2008.
DOI : 10.1371/journal.pone.0003286.g005

URL : https://hal.archives-ouvertes.fr/hal-00325528

M. Sicard, C. F. , D. Vlechouver, M. Bouchon, D. Grève et al., Variations of immune parameters in terrestrial isopods: a matter of gender, aging and Wolbachia, Naturwissenschaften, vol.364, issue.1513, pp.819-826, 2010.
DOI : 10.1007/s00114-010-0699-2

URL : https://hal.archives-ouvertes.fr/hal-00550064

P. Cook and E. Mcgraw, Wolbachia pipientis: an expanding bag of tricks to explore for disease control, Trends in Parasitology, vol.26, issue.8, pp.373-375, 2010.
DOI : 10.1016/j.pt.2010.05.006

A. Fytrou, P. Schofield, A. Kraaijeveld, and S. Hubbard, Wolbachia infection suppresses both host defence and parasitoid counter-defence, Proceedings of the Royal Society B: Biological Sciences, vol.265, issue.1395, pp.791-796, 2006.
DOI : 10.1098/rspb.1998.0324

L. Hedges, J. Brownlie, O. Neill, S. Johnson, and K. , Wolbachia and Virus Protection in Insects, Science, vol.322, issue.5902, p.702, 2008.
DOI : 10.1126/science.1162418

L. Teixeira, A. Ferreira, and M. Ashburner, The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster, PLoS Biology, vol.23, issue.12, p.2, 2008.
DOI : 10.1371/journal.pbio.1000002.t001

S. Osborne, Y. Leong, O. Neill, S. Johnson, and K. , Variation in Antiviral Protection Mediated by Different Wolbachia Strains in Drosophila simulans, PLoS Pathogens, vol.76, issue.11, p.1000656, 2009.
DOI : 10.1371/journal.ppat.1000656.t001

L. Moreira, I. Iturbe-ormaetxe, J. Jeffery, G. Lu, A. Pyke et al., A Wolbachia Symbiont in Aedes aegypti Limits Infection with Dengue, Chikungunya, and Plasmodium, SL: A Wolbachia symbiont in Aedes aegypti limits infection with Dengue, Chikungunya, and Plasmodium, pp.1268-1278, 2009.
DOI : 10.1016/j.cell.2009.11.042

Z. Kambris, A. Blagborough, S. Pinto, M. Blagrove, H. Godfray et al., Wolbachia Stimulates Immune Gene Expression and Inhibits Plasmodium Development in Anopheles gambiae, PLoS Pathogens, vol.113, issue.10, p.1001143, 2010.
DOI : 10.1371/journal.ppat.1001143.t001

G. Bian, Y. Xu, P. Lu, Y. Xie, and Z. Xi, The Endosymbiotic Bacterium Wolbachia Induces Resistance to Dengue Virus in Aedes aegypti, PLoS Pathogens, vol.17, issue.4, p.1000833, 2010.
DOI : 10.1371/journal.ppat.1000833.s001

A. Saridaki and K. Bourtzis, Wolbachia: more than just a bug in insects genitals, Current Opinion in Microbiology, vol.13, issue.1, pp.67-72, 2010.
DOI : 10.1016/j.mib.2009.11.005

T. Walker and L. Moreira, Can Wolbachia be used to control malaria? Mem Inst Oswaldo Cruz, pp.212-217, 2011.
DOI : 10.1590/s0074-02762011000900026

URL : http://www.bioline.org.br/pdf?oc11159

L. Brennan, B. Keddie, H. Braig, and H. Harris, The Endosymbiont Wolbachia pipientis Induces the Expression of Host Antioxidant Proteins in an Aedes albopictus Cell Line, PLoS ONE, vol.279, issue.5, p.2083, 2008.
DOI : 10.1371/journal.pone.0002083.t001

N. Kremer, D. Charif, H. Henri, F. Gavory, P. Wincker et al., Influence of Wolbachia on host gene expression in an obligatory symbiosis, BMC Microbiology, vol.12, issue.Suppl 1, 2011.
DOI : 10.1073/pnas.0608407104

URL : https://hal.archives-ouvertes.fr/hal-00763438

A. Vigneron, D. Charif, A. Vallier, C. Vincent-monegat, F. Gavory et al., Host gene response to endosymbiont and pathogen in the cereal weevil Sitophilus oryzae, BMC Microbiology, vol.12, issue.Suppl 1, 2011.
DOI : 10.1098/rspb.2005.3383

D. Bouchon, T. Rigaud, and P. Juchault, Evidence for widespread Wolbachia infection in isopod crustaceans: molecular identification and host feminization, Proceedings of the Royal Society B: Biological Sciences, vol.265, issue.1401, pp.1081-1090, 1998.
DOI : 10.1098/rspb.1998.0402

M. Matz, Amplification of Representative cDNA Samples from Microscopic Amounts of Invertebrate Tissue to Search for New Genes, Methods Mol Biol, vol.183, pp.3-18, 2002.
DOI : 10.1385/1-59259-280-5:003

Y. Zhu, E. Machleder, A. Chenchik, R. Li, and P. Siebert, Reverse transcriptase template switching: a smart approach for full-length cDNA library construction, Biotechniques, vol.30, pp.892-897, 2001.

L. Diatchenko, Y. Lau, A. Campbell, A. Chenchik, F. Moqadam et al., Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries., Proceedings of the National Academy of Sciences, vol.93, issue.12, pp.6025-6030, 1996.
DOI : 10.1073/pnas.93.12.6025

L. Diatchenko, S. Lukyanov, Y. Lau, and P. Siebert, [20] Suppression subtractive hybridization: A versatile method for identifying differentially expressed genes, Methods Enzymol, vol.303, pp.349-380, 1999.
DOI : 10.1016/S0076-6879(99)03022-0

D. Rebrikov, O. Britanova, N. Gurskaya, K. Lukyanov, V. Tarabykin et al., Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization, Nucleic Acids Research, vol.28, issue.20, p.90, 2000.
DOI : 10.1093/nar/28.20.e90

P. Zhulidov, E. Bogdanova, A. Shcheglov, L. Vagner, G. Khaspekov et al., Simple cDNA normalization using kamchatka crab duplex-specific nuclease, Nucleic Acids Research, vol.32, issue.3, p.37, 2004.
DOI : 10.1093/nar/gnh031

URL : http://doi.org/10.1093/nar/gnh031

D. Shagin, D. Rebrikov, V. Kozhemyako, I. Altshuler, A. Shcheglov et al., A Novel Method for SNP Detection Using a New Duplex-Specific Nuclease From Crab Hepatopancreas, Genome Research, vol.12, issue.12, pp.1935-1942, 2002.
DOI : 10.1101/gr.547002

B. Ewing and P. Green, II. Error Probabilities, Genome Research, vol.8, issue.3, pp.186-194, 1998.
DOI : 10.1101/gr.8.3.186

G. Pertea, X. Huang, F. Liang, V. Antonescu, R. Sultana et al., TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets, Bioinformatics, vol.19, issue.5, pp.651-652, 2003.
DOI : 10.1093/bioinformatics/btg034

A. Conesa, S. Götz, J. García-gómez, J. Terol, M. Talón et al., Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research, Bioinformatics, vol.21, issue.18, pp.3674-3676, 2005.
DOI : 10.1093/bioinformatics/bti610

S. Götz, J. García-gómez, J. Terol, T. Williams, S. Nagaraj et al., High-throughput functional annotation and data mining with the Blast2GO suite, Nucleic Acids Research, vol.36, issue.10, pp.3420-3435, 2008.
DOI : 10.1093/nar/gkn176

D. Stekel, Y. Git, and F. Falciani, The Comparison of Gene Expression from Multiple cDNA Libraries, Genome Research, vol.10, issue.12, pp.2055-2061, 2000.
DOI : 10.1101/gr.GR-1325RR

F. Al-shahrour, R. Díaz-uriarte, and J. Dopazo, FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes, Bioinformatics, vol.20, issue.4, pp.578-580, 2004.
DOI : 10.1093/bioinformatics/btg455

O. Marshall, PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR, Bioinformatics, vol.20, issue.15, pp.2471-2472, 2004.
DOI : 10.1093/bioinformatics/bth254

M. Pfaffl, A new mathematical model for relative quantification in real-time RT-PCR, Nucleic Acids Research, vol.29, issue.9, p.45, 2001.
DOI : 10.1093/nar/29.9.e45

M. Pfaffl, G. Horgan, and L. Dempfle, Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Research, vol.30, issue.9, p.36, 2002.
DOI : 10.1093/nar/30.9.e36

A. Marchler-bauer, S. Lu, J. Anderson, F. Chitsaz, M. Derbyshire et al., CDD: a Conserved Domain Database for the functional annotation of proteins, Nucleic Acids Research, vol.39, issue.Database, pp.225-234, 2011.
DOI : 10.1093/nar/gkq1189

J. Herbinière, C. Braquart-varnier, P. Grève, J. Strub, J. Frère et al., Armadillidin: a novel glycine-rich antibacterial peptide directed against gram-positive bacteria in the woodlouse Armadillidium vulgare (Terrestrial Isopod, Crustacean), Developmental & Comparative Immunology, vol.29, issue.6, pp.489-499, 2005.
DOI : 10.1016/j.dci.2004.11.001

J. Herbinière, P. Grève, J. Strub, D. Thiersé, M. Raimond et al., Protein profiling of hemocytes from the terrestrial crustacean Armadillidium vulgare,, Developmental & Comparative Immunology, vol.32, issue.8, pp.875-882, 2008.
DOI : 10.1016/j.dci.2008.01.007

P. Jiravanichpaisal, B. Lee, and K. Söderhäll, Cell-mediated immunity in arthropods: Hematopoiesis, coagulation, melanization and opsonization, Immunobiology, vol.211, issue.4, pp.213-236, 2006.
DOI : 10.1016/j.imbio.2005.10.015

S. Mctaggart, C. Conlon, J. Colbourne, M. Blaxter, and T. Little, The components of the Daphnia pulex immune system as revealed by complete genome sequencing, BMC Genomics, vol.10, issue.1, p.175, 2009.
DOI : 10.1186/1471-2164-10-175

J. Ghosh, C. Lun, A. Majeske, S. Sacchi, C. Schrankel et al., Invertebrate immune diversity, Developmental & Comparative Immunology, vol.35, issue.9, pp.959-974, 2010.
DOI : 10.1016/j.dci.2010.12.009

L. Vazquez, J. Alpuche, G. Maldonado, C. Agundis, A. Pereyra-morales et al., Review: Immunity mechanisms in crustaceans, Innate Immunity, vol.15, issue.3, pp.179-188, 2009.
DOI : 10.1177/1753425909102876

H. Liu, C. Wu, Y. Matsuda, S. Kawabata, B. Lee et al., Peptidoglycan activation of the proPO-system without a peptidoglycan receptor protein (PGRP)?, Developmental & Comparative Immunology, vol.35, issue.1, pp.51-61, 2011.
DOI : 10.1016/j.dci.2010.08.005

J. Stillman, J. Colbourne, C. Lee, N. Patel, M. Phillips et al., Recent advances in crustacean genomics, Integrative and Comparative Biology, vol.48, issue.6, pp.852-868, 2008.
DOI : 10.1093/icb/icn096

J. Colbourne, M. Pfrender, D. Gilbert, W. Thomas, A. Tucker et al., The Ecoresponsive Genome of Daphnia pulex, Science, vol.331, issue.6017, pp.555-561, 2011.
DOI : 10.1126/science.1197761

P. Jiravanichpaisal, N. Puanglarp, S. Petkon, S. Donnuea, I. Söderhäll et al., Expression of immune-related genes in larval stages of the giant tiger shrimp, Penaeus monodon, Fish & Shellfish Immunology, vol.23, issue.4, pp.815-824, 2007.
DOI : 10.1016/j.fsi.2007.03.003

T. Wongsurawat, R. Leelatanawit, N. Thamniemdee, U. Uawisetwathana, N. Karoonuthaisiri et al., Identification of testis-relevant genes using in silico analysis from testis ESTs and cDNA microarray in the black tiger shrimp (Penaeus monodon), BMC Molecular Biology, vol.11, issue.1, p.55, 2010.
DOI : 10.1186/1471-2199-11-55

D. Gorbach, Z. Hu, Z. Du, and M. Rothschild, Mining ESTs to Determine the Usefulness of SNPs Across Shrimp Species, Animal Biotechnology, vol.21, issue.2, pp.100-103, 2010.
DOI : 10.1023/A:1020667228952

A. Tagmount, M. Wang, E. Lindquist, Y. Tanaka, K. Teranishi et al., The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database, PLoS ONE, vol.361, issue.2, p.9327, 2010.
DOI : 10.1371/journal.pone.0009327.s001

A. King, S. Cragg, Y. Li, J. Dymond, M. Guille et al., Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes, Proceedings of the National Academy of Sciences, vol.107, issue.12, pp.5345-5350, 2010.
DOI : 10.1073/pnas.0914228107

I. Söderhäll, E. Bangyeekhun, S. Mayo, and K. Söderhäll, Hemocyte production and maturation in an invertebrate animal; proliferation and gene expression in hematopoietic stem cells of Pacifastacus leniusculus, Developmental & Comparative Immunology, vol.27, issue.8, pp.661-672, 2003.
DOI : 10.1016/S0145-305X(03)00039-9

I. Söderhäll, Y. Kim, P. Jiravanichpaisal, S. Lee, and K. Söderhäll, An Ancient Role for a Prokineticin Domain in Invertebrate Hematopoiesis, The Journal of Immunology, vol.174, issue.10, pp.6153-6160, 2005.
DOI : 10.4049/jimmunol.174.10.6153

P. Wang, Z. Gu, X. Huang, B. Liu, X. Deng et al., An immune deficiency homolog from the white shrimp, Litopenaeus vannamei, activates antimicrobial peptide genes, Molecular Immunology, vol.46, issue.8-9, pp.1897-1904, 2009.
DOI : 10.1016/j.molimm.2009.01.005

L. Zheng, L. Hou, A. Chang, M. Yu, J. Ma et al., Expression pattern of a Gram-negative bacteria-binding protein in early embryonic development of Artemia sinica and after bacterial challenge, Developmental & Comparative Immunology, vol.35, issue.1, pp.35-43, 2011.
DOI : 10.1016/j.dci.2010.08.002

E. Jaenicke, S. Fraune, S. May, P. Irmak, R. Augustin et al., Is activated hemocyanin instead of phenoloxidase involved in immune response in woodlice?, Developmental & Comparative Immunology, vol.33, issue.10, pp.1055-1063, 2009.
DOI : 10.1016/j.dci.2009.05.005

D. Pless, M. Aguilar, A. Falcón, and E. Lozano-alvarez, Latent phenoloxidase activity and N-terminal amino acid sequence of hemocyanin from Bathynomus giganteus, a primitive crustacean, Archives of Biochemistry and Biophysics, vol.409, issue.2, pp.402-410, 2003.
DOI : 10.1016/S0003-9861(02)00615-X

F. Chevalier, J. Herbinière-gaboreau, J. Bertaux, M. Raimond, F. Morel et al., The Immune Cellular Effectors of Terrestrial Isopod Armadillidium vulgare: Meeting with Their Invaders, Wolbachia, PLoS ONE, vol.26, issue.Pt 3, p.18531, 2011.
DOI : 10.1371/journal.pone.0018531.g007

URL : https://hal.archives-ouvertes.fr/hal-00591758

Z. Xi, L. Gavotte, Y. Xie, and S. Dobson, Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host, BMC Genomics, vol.9, issue.1, p.1, 2008.
DOI : 10.1186/1471-2164-9-1

T. Yoshida, H. Nakamura, H. Masutani, and J. Yodoi, The Involvement of Thioredoxin and Thioredoxin Binding Protein-2 on Cellular Proliferation and Aging Process, Annals of the New York Academy of Sciences, vol.1055, issue.1, pp.1-12, 2005.
DOI : 10.1196/annals.1323.002

S. Ong, J. Ho, B. Ho, and J. Ding, Iron-withholding strategy in innate immunity, Immunobiology, vol.211, issue.4, pp.295-314, 2006.
DOI : 10.1016/j.imbio.2006.02.004

N. Kremer, D. Voronin, D. Charif, P. Mavingui, B. Mollereau et al., Wolbachia Interferes with Ferritin Expression and Iron Metabolism in Insects, PLoS Pathogens, vol.14, issue.2, p.1000630, 2009.
DOI : 10.1371/journal.ppat.1000630.s001

URL : https://hal.archives-ouvertes.fr/hal-00539322

T. Yano and S. Kurata, Induction of autophagy via innate bacterial recognition, Autophagy, vol.4, issue.7, pp.958-960, 2008.
DOI : 10.4161/auto.6802

H. Virgin and B. Levine, Autophagy genes in immunity, Nature Immunology, vol.5, issue.5, pp.461-470, 2009.
DOI : 10.1016/j.cell.2008.07.021

V. Smith, J. Fernandes, G. Kemp, and C. Hauton, Crustins: Enigmatic WAP domain-containing antibacterial proteins from crustaceans, Developmental & Comparative Immunology, vol.32, issue.7, pp.758-772, 2008.
DOI : 10.1016/j.dci.2007.12.002

K. Bourtzis, M. Pettigrew, O. Neill, and S. , Wolbachia neither induces nor suppresses transcripts encoding antimicrobial peptides, Insect Molecular Biology, vol.265, issue.6, pp.635-639, 2000.
DOI : 10.1038/32195

Y. Nakamura, T. Gotoh, S. Imanishi, K. Mita, T. Kurtti et al., Differentially expressed genes in silkworm cell cultures in response to infection by Wolbachia and Cardinium endosymbionts, Insect Molecular Biology, vol.98, issue.3, pp.279-289, 2011.
DOI : 10.1111/j.1365-2583.2010.01056.x

F. Login, S. Balmand, A. Vallier, C. Vincent-monégat, A. Vigneron et al., Anti-microbial peptides keep insect endosymbionts under control, Science
DOI : 10.1126/science.1209728

A. Zelensky and J. Gready, The C-type lectin-like domain superfamily, FEBS Journal, vol.115, issue.1, pp.6179-6217, 2005.
DOI : 10.1186/1471-2105-5-150

J. Ao, E. Ling, and X. Yu, Drosophila C-type lectins enhance cellular encapsulation, Molecular Immunology, vol.44, issue.10, pp.2541-2548, 2007.
DOI : 10.1016/j.molimm.2006.12.024

E. Kvennefors, W. Leggat, O. Hoegh-guldberg, B. Degnan, and A. Barnes, An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts, Developmental & Comparative Immunology, vol.32, issue.12, pp.1582-1592, 2008.
DOI : 10.1016/j.dci.2008.05.010

J. Vidal-dupiol, M. Adjeroud, E. Roger, L. Foure, D. Duval et al., Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms, BMC Physiology, vol.9, issue.1, p.14, 2009.
DOI : 10.1186/1472-6793-9-14

URL : https://hal.archives-ouvertes.fr/halsde-00431331

S. Bulgheresi, I. Schabussova, T. Chen, N. Mullin, R. Maizels et al., A New C-Type Lectin Similar to the Human Immunoreceptor DC-SIGN Mediates Symbiont Acquisition by a Marine Nematode, Applied and Environmental Microbiology, vol.72, issue.4, pp.2950-2956, 2006.
DOI : 10.1128/AEM.72.4.2950-2956.2006

S. Lee and K. Söderhäll, Characterization of a Pattern Recognition Protein, a Masquerade-Like Protein, in the Freshwater Crayfish Pacifastacus leniusculus, The Journal of Immunology, vol.166, issue.12, pp.7319-7326, 2001.
DOI : 10.4049/jimmunol.166.12.7319

T. Sriphaijit, T. Flegel, and S. Senapin, Characterization of a shrimp serine protease homolog, a binding protein of yellow head virus, Developmental & Comparative Immunology, vol.31, issue.11, pp.1145-1158, 2007.
DOI : 10.1016/j.dci.2007.03.005

L. Serbus and W. Sullivan, A Cellular Basis for Wolbachia Recruitment to the Host Germline, PLoS Pathogens, vol.15, issue.12, p.190, 2007.
DOI : 10.1371/journal.ppat.0030190.sg002

T. Rigaud and P. Juchault, Success and failure of horizontal transfers of feminizing Wolbachia endosymbionts in woodlice, Journal of Evolutionary Biology, vol.8, issue.2, pp.249-255, 1995.
DOI : 10.1046/j.1420-9101.1995.8020249.x

G. Hughes, X. Ren, J. Ramirez, J. Sakamoto, J. Bailey et al., Wolbachia Infections in Anopheles gambiae Cells: Transcriptomic Characterization of a Novel Host-Symbiont Interaction, PLoS Pathogens, vol.6, issue.2, p.1001296, 2011.
DOI : 10.1371/journal.ppat.1001296.s004