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Rapport (Rapport Technique) Année : 2021

Seek & Blastn Standard Operating Procedure

Résumé

Seek & Blastn is a semi-automated tool that automatically extracts gene identifiers and nucleotide sequences using named entity recognition techniques. The sentence containing each sequence is automatically analyzed to assign a claimed status (targeting or nontargeting) that is compared with the most likely status according to blastn analysis using the human genomic + transcript database. Subsequently, this tool can be used to identify nucleotide sequence reagent errors in the published or forthcoming scientific literature. The Seek & Blastn tool was developed by Cyril Labbé from the University of Grenoble Alpes, The National Center for Scientific Research (CNRS), Grenoble, France.

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Dates et versions

hal-03117303 , version 1 (21-01-2021)

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Jennifer Byrne, Yasunori Park, Amanda Capes-Davis, Bertrand Favier, Guillaume Cabanac, et al.. Seek & Blastn Standard Operating Procedure. [Technical Report] Seek&Blastn Team. 2021. ⟨hal-03117303⟩
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