TotemBioNet User Manual

Hélène Collavizza (1)

1 I3S - Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis

This report is the user manual of TotemBioNet available at : https://gitlab.com/totembionet/totembionet. TotemBionet is a tool dedicated to parameter identification for Biological Regulatory Networks (BRN), using the discrete formalism of René Thomas. Given a BRN and some properties on the dynamics of the system, TotemBionet outputs all the parameterizations which satisfy these dynamic properties.

Domaines: Bio-informatique [q-bio.QM]; Informatique [cs]

Hélène Collavizza. TotemBioNet User Manual. [Research Report] Univertsité Côte d'Azur. 2020. ⟨hal-03082838⟩