Identification of a newly described OsHV-1 mu var from the North Adriatic Sea (Italy), J. Gen. Virol, vol.99, pp.693-703, 2018. ,
Genotypic and phenotypic diversity of herpes simplex virus 2 within the infected neonatal population, vol.4, pp.590-608, 2019. ,
FastQC: A Quality Control Tool for High Throughput Sequence Data, 2010. ,
Viruses infecting marine molluscs, J. Invertebr. Pathol, vol.147, pp.118-135, 2017. ,
French scallops: a new host for ostreid herpesvirus-1, Virology, vol.290, pp.342-349, 2001. ,
Experimental herpes-like viral infections in marine bivalves: demonstration of interspecies transmission, Dis. Aquat. Organ, vol.46, pp.1-6, 2001. ,
Evidence for interspecies transmission of oyster herpesvirus in marine bivalves, J. Gen. Virol, vol.82, pp.865-870, 2001. ,
Detection of oyster herpesvirus DNA and proteins in asymptomatic Crassostrea gigas adults, Virus Res, vol.84, pp.151-160, 2002. ,
Genetic parameters of resistance to Vibrio aestuarianus, and OsHV-1 infections in the Pacific oyster, Crassostrea gigas, at three different life stages, Genet. Sel. Evol, vol.49, p.23, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01479152
Can selection for resistance to OsHV-1 infection modify susceptibility to Vibrio aestuarianus infection in Crassostrea gigas? First insights from experimental challenges using primary and successive exposures, Vet. Res, vol.46, p.139, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01259809
Longrange PCR and high-throughput sequencing of Ostreid herpesvirus 1 indicate high genetic diversity and complex evolution process, Virology, vol.526, pp.81-90, 2019. ,
Emerging and endemic types of Ostreid herpesvirus 1 were detected in bivalves in China, J. Invertebr. Pathol, vol.124, pp.98-106, 2015. ,
Detection of ostreid herpesvirus 1 DNA by PCR in bivalve molluscs: a critical review, J. Virol. Methods, vol.139, pp.1-11, 2007. ,
Proportion of revertant and mutant phage in a growing population, as a function of mutation and growth-rate, Gene, vol.1, pp.27-32, 1976. ,
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, pp.2114-2120, 2014. ,
Population diversity and collective interactions during influenza virus infection, J. Virol, vol.91, pp.1164-1181, 2017. ,
Ecology of emerging infectious diseases of invertebrates, Ecology of Invertebrate Diseases, pp.587-625, 2018. ,
Complete genome sequence of Ostreid herpesvirus type 1 mu Var isolated during mortality events in the Pacific oyster Crassostrea gigas in France and Ireland, Virology, vol.509, pp.239-251, 2017. ,
Ostreid herpesvirus type 1 genomic diversity in wild populations of Pacific oyster Crassostrea gigas from Italian coasts, J. Invertebr. Pathol, vol.137, pp.71-83, 2016. ,
A novel divergent group of Ostreid herpesvirus 1 mu Var variants associated with a mortality event in Pacific oyster spat in Normandy (France) in 2016, J. Fish Dis, vol.41, pp.1759-1769, 2018. ,
Histological alterations in Pacific oysters Crassostrea gigas that survived a summer mortality event in Baja California, Mexico. J. Aquat. Anim. Health, vol.30, pp.31-38, 2018. ,
Assessment of heat shock and laboratory virus challenges to selectively breed for ostreid herpesvirus 1 (OsHV-1) resistance in the Pacific oyster, Crassostrea gigas, Aquaculture, vol.469, pp.50-58, 2017. ,
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R, BMC Bioinformatics, vol.12, p.35, 2011. ,
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w(1118); iso-2; iso-3, Fly, vol.6, pp.80-92, 2012. ,
Virusdisease of portuguese oyster (Crassostrea-Angulata Lmk), Comptes Rendus Hebdomadaires Seances Acad. Sci. Ser. D, vol.282, pp.1991-1998, 1976. ,
Herpesvirus infection in European flat oysters Ostrea edulis obtained from brood stocks of various geographic origins and grown in Galicia, Dis. Aquat. Organ, vol.78, pp.181-188, 2008. ,
A novel class of herpesvirus with bivalve hosts, J. Gen. Virol, vol.86, pp.41-53, 2005. ,
Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters, Nat. Commun, vol.9, p.4215, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01898110
Differential basal expression of immune genes confers Crassostrea gigas resistance to Pacific oyster mortality syndrome, BMC Genomics, vol.21, p.63, 2020. ,
URL : https://hal.archives-ouvertes.fr/hal-02432454
New insight for the genetic evaluation of resistance to ostreid herpesvirus infection, a worldwide disease, Crassostrea gigas, vol.10, p.127917, 2015. ,
First evaluation of resistance to both a California OsHV-1 variant and a French OsHV-1 microvariant in Pacific oysters, BMC Genet, vol.20, p.96, 2019. ,
Mutation rates among RNA viruses, Proc. Natl. Acad. Sci. U.S.A, vol.96, pp.13910-13913, 1999. ,
, P. O. A. H. W. Oyster mortality. EFSA J, vol.13, pp.4122-4123, 2015.
Technical Guidance for the Development of the Growing Area Aspects of Bivalve Mollusc Sanitation Programmes, 2018. ,
Oyster herpes-type virus, Science, vol.178, pp.759-760, 1972. ,
Virion glycoprotein-mediated immune evasion by human cytomegalovirus: a sticky virus makes a slick getaway, Microbiol. Mol. Biol. Rev, vol.80, pp.663-677, 2016. ,
Infectious diseases of marine molluscs and host responses as revealed by genomic tools, Philos. Trans. R. Soc. Lond. B Biol. Sci, vol.371, p.20150206, 2016. ,
Genomic selection for growth traits in Pacific oyster (Crassostrea gigas): potential of low-density marker panels for breeding value prediction, Front. Genet, vol.9, p.391, 2018. ,
, , 2013.
, Ostreid herpesvirus 1 infection in farmed Pacific oyster larvae Crassostrea gigas (Thunberg) in Korea, J. Fish Dis, vol.36, pp.969-972
Identification and characterisation of an ostreid herpesvirus-1 microvariant (OsHV-1 micro-var) in Crassostrea gigas (Pacific oysters) in Australia, Dis. Aquat. Organ, vol.105, pp.109-126, 2013. ,
An emerging new fowl adenovirus genotype, Heliyon, vol.5, p.1732, 2019. ,
Fast gapped-read alignment with Bowtie 2, Nat. Methods, vol.9, pp.357-354, 2012. ,
Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes, Virus Evol, vol.2, p.17, 2016. ,
Quasispecies Theory and the Behavior of RNA Viruses, PLoS Pathog, vol.6, p.1001005, 2010. ,
Experimental transition of a Herpes-like virus to axenic larvae of the Pacific oyster Crassosrtrea gigas, Bull. Eur. Ass. Fish Pathol, vol.14, p.69, 1994. ,
Oysters and vibrios as a model for disease dynamics in wild animals, Trends Microbiol, vol.24, pp.568-580, 2016. ,
Etude Du Processus Invasif de Crassostrea gigas en Bretagne: Etat des Lieux, 2009. ,
URL : https://hal.archives-ouvertes.fr/tel-00444262
The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, pp.2078-2079, 2009. ,
Natural recombination in alphaherpesviruses: insights into viral evolution through full genome sequencing and sequence analysis, Infect. Genet. Evol, vol.49, pp.174-185, 2017. ,
The relationship between polymorphisms of HCMV UL144 ORF and clinical manifestations in 73 strains with congenital and/or perinatal HCMV infection, Arch. Virol, vol.152, pp.115-124, 2007. ,
Variants of the ostreid herpesvirus-1 (OsHV-1) in the Crassostrea gigas oyster, Virologie, vol.17, pp.81-87, 2013. ,
Exploring first interactions between ostreid herpesvirus 1 (OsHV-1) and its host, Crassostrea gigas: effects of specific antiviral antibodies and dextran sulfate, Front. Microbiol, vol.10, p.1128, 2019. ,
Genetic bottlenecks in intraspecies virus transmission, Curr. Opin. Virol, vol.28, pp.20-25, 2018. ,
Summer mortalities and detection of ostreid herpesvirus microvariant in Pacific oyster Crassostrea gigas in Sweden and Norway, Dis. Aquat. Organ, vol.117, pp.171-176, 2016. ,
Evolution and emergence of pathogenic viruses: past, present, and future, Intervirology, vol.60, pp.1-7, 2017. ,
Clonality and intracellular polyploidy in virus evolution and pathogenesis, Proc. Natl. Acad. Sci. U.S.A, vol.112, pp.8887-8892, 2015. ,
Mass mortalities of Pacific oysters Crassostrea gigas reflect infectious diseases and vary with farming practices in the Mediterranean Thau lagoon, France. Aquac. Environ. Interact, vol.2, pp.215-237, 2012. ,
Infectious diseases in oyster aquaculture require a new integrated approach, Philos. Trans. R. Soc. B Biol. Sci, vol.371, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01483233
Crassostrea gigas mortality in France: the usual suspect, a herpes virus, may not be the killer in this polymicrobial opportunistic disease, Front. Microbiol, vol.6, p.686, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01216445
Temperature influence on pathogen transmission and subsequent mortalities in juvenile Pacific oysters Crassostrea gigas, Aquac. Environ. Interact, vol.3, pp.257-273, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00946757
Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice, PLoS Pathog, vol.1, p.11, 2005. ,
Virus population dynamics during infection, Curr. Opin. Virol, vol.23, pp.82-87, 2017. ,
Occurrence of OsHV-1 in Crassostrea gigas cultured in Ireland during an exceptionally warm summer. Selection of less susceptible oysters, Front. Physiol, vol.7, p.492, 2016. ,
A herpes-like virus infects a non-ostreid bivalve species: virus replication in Ruditapes philippinarum larvae, Dis. Aquat. Organ, vol.45, pp.1-7, 2001. ,
Analysis of clinical ostreid herpesvirus 1 (Malacoherpesviridae) specimens by sequencing amplified fragments from three virus genome areas, J. Virol, vol.86, pp.5942-5947, 2012. ,
Viruses infecting bivalve molluscs, Aquat. Living Resour, vol.17, pp.397-409, 2004. ,
Impacts of genome-wide analyses on our understanding of human herpesvirus diversity and evolution, J. Virol, vol.92, pp.908-925, 2018. ,
Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants, PLoS Pathog, vol.7, p.1001344, 2011. ,
Rapid intrahost evolution of human cytomegalovirus is shaped by demography and positive selection, PLoS Genet, vol.9, p.1003735, 2013. ,
Human cytomegalovirus intrahost evolution-a new avenue for understanding and controlling herpesvirus infections, Curr. Opin. Virol, vol.8, pp.109-115, 2014. ,
Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome of Vibrio infections, Proc. Natl. Acad. Sci. U.S.A, vol.116, pp.14238-14247, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02163271
Detection and description of a particular Ostreid herpesvirus 1 genotype associated with massive mortality outbreaks of Pacific oysters, Crassostrea gigas, in France in 2008, Virus Res, vol.153, pp.92-99, 2010. ,
Mass mortality in bivalves and the intricate case of the Pacific oyster, Crassostrea gigas, J. Invertebr. Pathol, vol.131, pp.2-10, 2015. ,
Disease will limit future food supply from the global crustacean fishery and aquaculture sectors, J. Invertebr. Pathol, vol.110, pp.141-157, 2012. ,
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data, Evol. Appl, vol.12, pp.519-534, 2019. ,
Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population, Nature, vol.439, pp.344-348, 2006. ,
Primers for PCR-based detection of ostreid herpes virus-1 (OsHV-1): application in a survey of New Zealand molluscs, Aquaculture, vol.272, pp.126-139, 2007. ,
Create Elegant Data Visualisations Using the Grammar of Graphics, 2016. ,
Complete genome sequence of Ostreid herpesvirus-1 associated with mortalities of Scapharca broughtonii broodstocks, Virol. J, vol.12, p.110, 2015. ,
RNA recombination enhances adaptability and is required for virus spread and virulence, Cell Host Microbe, vol.19, pp.493-503, 2016. ,
Matters of size: genetic bottlenecks in virus infection and their potential impact on evolution, Annu. Rev. Virol, vol.2, pp.161-179, 2015. ,