Bioimage Analysis Tools

Kota Miura (1, 2) , Sébastien Tosi (3) , Christoph Möhl (4) , Chong Zhang (5) , Perrine Paul-Gilloteaux (6) , Ulrike Schulze (7) , Simon F Norrelykke (8) , Christian Tischer (1) , Thomas Pengo (9)

1 EMBL - European Molecular Biology Laboratory [Heidelberg]
2 National Institute of Basic Biology
3 IRB - Institute for Research in Biomedicine [Barcelona, Spain]
4 DZNE - German Research Center for Neurodegenerative Diseases - Deutsches Zentrum für Neurodegenerative Erkrankungen
5 UPF - Universitat Pompeu Fabra [Barcelona]
6 ITX - ITX - unité de recherche de l'institut du thorax
7 The Francis Crick Institute [London]
8 ETH Zürich - Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]
9 UMN - University of Minnesota [Twin Cities]

In this chapter, we provide an overview of tools useful for bioimage analysis. The list is far from being exhaustive, but most of these are tools we use, or have used, in actual research projects. A few of the listed tools have been tested, but not used, by the authors; they are listed here for their potential and specific features that are not commonly found in other tools.

Domaines: Traitement des images [eess.IV]; Imagerie; Génie logiciel [cs.SE]

Kota Miura, Sébastien Tosi, Christoph Möhl, Chong Zhang, Perrine Paul-Gilloteaux, et al.. Bioimage Analysis Tools. Kota Miura. Bioimage Data Analysis, Wiley-VCH, 2016, 978-3-527-80092-6. ⟨hal-02910986⟩