Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, vol.25, pp.3389-3402, 1997. ,
Domestic-animal genomics: deciphering the genetics of complex traits, Nat. Rev. Genet, vol.5, pp.202-212, 2004. ,
Patterns of linkage disequilibrium in the human genome, Nat. Rev. Genet, vol.3, pp.299-309, 2002. ,
Haploview: analysis and visualization of LD and haplotype maps, Bioinformatics, vol.21, pp.263-265, 2005. ,
GENETIX, logiciel sous WindowsTM pour la génétique des populations, INRA Prod. Anim, vol.9, pp.323-335, 1996. ,
Using haplotype blocks to map human complex trait loci, Trends Genet, vol.19, pp.135-140, 2003. ,
Identification of a doublet missense substitution in the bovine LRP4 gene as a candidate causal mutation for syndactyly in Holstein cattle, Genomics, vol.88, pp.610-621, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02657088
A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates, Genome Res, vol.14, pp.1424-1437, 2004. ,
Base-calling of automated sequencer traces using phred. II. Error probabilities, Genome Res, vol.8, pp.186-194, 1998. ,
Extensive genome-wide linkage disequilibrium in cattle, 2000. ,
, Genome Res, vol.10, pp.220-227
, Cattle Breeds: An Encyclopedia. Misset, 1995.
PHYLIP: Phylogeny Inference Package (Version 3.2), Cladistics, vol.5, pp.164-166, 1989. ,
Admixture and diversity in West African cattle populations, Mol. Ecol, vol.13, pp.3477-3487, 2004. ,
Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism, Genetics, vol.173, pp.1503-1510, 2006. ,
The structure of haplotype blocks in the human genome, Science, vol.296, pp.2225-2229, 2002. ,
Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26, Genetics, vol.172, pp.425-436, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02653456
Can the same markers be used in multiple breeds?, 8th World Congress on Genetics Applied to Livestock Products, pp.22-38, 2006. ,
Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition, Proc. Natl. Acad. Sci. USA, vol.101, pp.2398-2403, 2004. ,
Essai d'analyse des relations génétiques entre les races bovines franc xaises à l'aide du polymorphisme biochimique, Genet. Sel. Evol, vol.22, pp.317-338, 1990. ,
African pastoralism: genetic imprints of origins and migrations, Science, vol.296, pp.336-339, 2002. ,
, An interactive bovine in silico SNP database (IBISS), 2004.
, Mamm. Genome, vol.15, pp.819-827
Novel multilocus measure of linkage disequilibrium to estimate past effective population size, Genome Res, vol.13, pp.635-643, 2003. ,
Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population, Theor. Popul. Biol, vol.8, pp.117-126, 1975. ,
SEAN: SNP prediction and display program utilizing EST sequence clusters, Bioinformatics, vol.22, pp.495-496, 2006. ,
A rapid method for the purification of DNA from blood, Nucleic Acids Res, vol.15, p.9611, 1987. ,
Genetic structure of eighteen local south European beef cattle breeds by comparative F-statistics analysis, J. Anim. Breed. Genet, vol.120, pp.73-87, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-02669752
Genetic diversity and population structure of 20 North European cattle breeds, J. Hered, vol.91, pp.446-457, 2000. ,
A first-generation metric linkage disequilibrium map of bovine chromosome 6, Genetics, vol.174, pp.79-85, 2006. ,
A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in Holstein-Friesian cattle, Genetics, vol.176, pp.763-772, 2007. ,
Systematics and phylogeny of cattle, pp.1-14, 1997. ,
Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature, vol.438, pp.803-819, 2005. ,
Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers, Anim. Genet, vol.29, pp.333-340, 1998. ,
A general approach to single-nucleotide polymorphism discovery, Nat. Genet, vol.23, pp.452-456, 1999. ,
Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map, Nat. Genet, vol.6, pp.384-390, 1994. ,
Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping, Genetics, vol.161, pp.373-379, 2002. ,
Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites, Anim. Genet, vol.28, pp.338-345, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-02684434
Caractérisation de la race bovine Somba à l'aide de marqueurs moléculaires, Rev. Elev. Méd. Vét. Pays Trop, vol.54, pp.129-138, 2002. ,
Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, vol.89, pp.583-590, 1978. ,
Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6, Genetics, vol.169, pp.275-283, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02676310
Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs, BMC Genomics, vol.7, p.174, 2006. ,
Relations génétiques entre populations de taurins ou zébus d'Afrique de l'Ouest et taurins Européens, Genet. Sel. Evol, vol.30, pp.367-383, 1998. ,
Linkage disequilibrium in the human genome, Nature, vol.411, pp.199-204, 2001. ,
Human genome sequence variation and the influence of gene history, mutation and recombination, Nat. Genet, vol.32, pp.135-142, 2002. ,
The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol, vol.4, pp.406-425, 1987. ,
Etude du satut phylogénétique du bovin Kouri du lac Tchad à l'aide de marqueurs moléculaires, Rev. Elev. Méd. Vét. Pays Trop, vol.52, pp.155-162, 1999. ,
Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor, Popul. Biol, vol.2, pp.125-141, 1971. ,
Estimation of linkage disequilibrium in a sample of the United Kingdom dairy cattle population using unphased genotypes, J. Anim. Sci, vol.81, pp.617-623, 2003. ,
Recent human effective population size estimated from linkage disequilibrium, Genome Res, vol.17, pp.520-526, 2007. ,
The extent of linkage disequilibrium in a large cattle population of western Africa and its consequences for association studies, Anim. Genet, vol.38, pp.277-286, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02656325
Phylogeny of Bovidae based on behavior, glands, skulls and postcrania, in Antelopes, Deer, and Relatives: Fossil Record, Behavorial Ecology, Systematics, and Conservation, pp.203-222, 2000. ,
Estimating F-statistics for the analysis of population structure, Evolution, vol.19, pp.395-420, 1984. ,
Interpretation of population structure by F-statistics with special regard to system of mating, Evolution, vol.19, pp.395-420, 1965. ,