P. Abad, J. Gouzy, and J. Aury, Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita, Nat Biotechnol, vol.26, issue.8, pp.909-915, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01189285

R. Agrawal and R. Srikant, Mining sequential patterns, Proceedings of the Eleventh International Conference on Data Engineering, pp.3-14, 1995.

G. Agrios, Plant pathology, 1997.

T. Bailey and C. Elkan, Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp.28-36, 1994.

T. Bailey, M. Bodn, T. Whitington, and P. Machanick, The value of positionspecic priors in motif discovery using MEME, BMC Bioinformatics, vol.11, issue.1, p.179, 2010.

S. Bellafiore, Z. Shen, M. Rosso, P. Abad, P. Shih et al., Biochemical characterization of MI-ENG1, a family 5 endoglucanase secreted by the root-knot nematode Meloidogyne incognita, Eur J Biochem, vol.4, issue.10, pp.3255-3263, 2000.

X. Ding, J. Shields, R. Allen, and R. Hussey, Molecular cloning and characterisation of a venom allergen AG5-like cDNA from Meloidogyne incognita, Int J Parasitol, vol.30, issue.1, pp.77-81, 2000.

G. Dubreuil, M. Magliano, E. Deleury, P. Abad, and M. Rosso, , 2007.

, Transcriptome analysis of root-knot nematode functions induced in the early stages of parasitism, New Phytol, vol.176, issue.2, pp.426-436

O. Emanuelsson, S. Brunak, G. Von-heijne, and H. Nielsen, Locating proteins in the cell using TargetP, SignalP and related tools, Nature Protocols, vol.2, pp.953-971, 2007.

J. Fischer, V. Heun, and S. Kramer, Optimal string mining under frequency constraints, Proceedings of the 10th European Conference on Principles and Practice of Knowledge Discovery in Databases, pp.542-578, 2006.

G. Huang, B. Gao, T. Maier, R. Allen, E. Davis et al., A profile of putative parasitism genes expressed in the esophageal gland cells of the root-knot nematode M. incognita, Mol Plant Microbe Interact, vol.16, issue.5, pp.376-381, 2003.

G. Huang, R. Dong, R. Allen, E. Davis, T. Baum et al., Developmental expression and molecular analysis of two Meloidogyne incognita pectate lyase genes, Int J Parasitol, vol.35, issue.6, pp.685-692, 2005.

S. Jaubert, J. Laffaire, P. Abad, and M. Rosso, A polygalacturonase of animal origin isolated from the root-knot nematode Meloidogyne incognita, FEBS Lett, vol.522, issue.1-3, pp.109-112, 2002.
URL : https://hal.archives-ouvertes.fr/hal-02673697

C. Vens, M. Rosso, and E. Danchin, Identifying discriminative classification-based motifs in biological sequences, Comment citer ce, vol.27, issue.9, pp.1231-1238, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02652585

, Version définitive du manuscrit publié dans / Final version of the manuscript published in : Bioinformatics, 2011, vol.27

X. Ji and J. Bailey, An efficient technique for mining approximately frequent substring patterns, Proceedings of the Seventh IEEE International Conference on Data Mining Workshops, pp.325-330, 2007.

I. Jonassen, Efficient discovery of conserved patterns using a pattern graph, CABIOS, vol.13, issue.5, pp.509-522, 1997.

R. D. King, A. Srinivasan, and L. Dehaspe, Warmr: a data mining tool for chemical data, Journal of Computer-Aided Molecular Design, vol.15, issue.2, pp.173-181, 2001.

J. Koolman, K. Rohm, . Thieme, . Stuttgart, T. Ledger et al., Characterization of a new beta-1,4-endoglucanase gene from the root-knot nematode Meloidogyne incognita and evolutionary scheme for phytonematode family 5 glycosyl hydrolases, 1996.

, Gene, vol.382, pp.121-128

S. Lee and L. De-raedt, Constraint based mining of first order sequences in SeqLog, Database Support for Data Mining Applications, pp.155-176, 2004.

. Springer-verlag,

L. Li, C. Stoeckert, R. , and D. , OrthoMCL: identification of ortholog groups for eukaryotic genomes, Genome Res, vol.13, pp.2178-2189, 2003.

M. Mitreva-dautova, E. Roze, H. Overmars, L. De-graaff, A. Schots et al., A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita, Mol Plant Microbe Interact, vol.19, issue.5, pp.521-529, 2006.

C. Opperman, D. Bird, and V. Williamson, Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism, Proc Natl Acad Sci, vol.105, issue.39, pp.14802-14807, 2008.

E. Redhead and T. Bailey, Discriminative motif discovery in DNA and protein sequences using the DEME algorithm, BMC Bioinformatics, vol.8, p.385, 2007.

I. Rigoutsos and A. Floratos, Combinatorial pattern discovery in biological sequences: the TEIRESIAS algorithm, Bioinformatics, vol.14, issue.1, pp.55-67, 1998.

M. Rosso, B. Favery, C. Piotte, L. Arthaud, J. De-boer et al., Isolation of a cDNA encoding a beta-1,4-endoglucanase in the root-knot nematode Meloidogyne incognita and expression analysis during plant parasitism, Mol Plant Microbe Interact, vol.12, issue.7, pp.585-591, 1999.

R. Sayle and E. Milner-white, RasMol: Biomolecular graphics for all, Trends in Biochemical Sciences, vol.20, issue.9, p.374, 1995.

R. Srikant and R. Agrawal, Mining sequential patterns: Generalizations and performance improvements, Proceedings of the 5th International Conference on Extending Database Technology, pp.3-17, 1996.

X. Wang, H. Li, Y. Hu, P. Fu, and J. Xu, Molecular cloning and analysis of a new venom allergen-like protein gene from the root-knot nematode Meloidogyne incognita, Exp Parasitol, vol.117, issue.2, pp.133-140, 2007.

D. Weese and M. Schulz, Efficient string mining under constraints via the deferred frequency index, Proceedings of the 8th industrial conference on Advances in Data Mining: Medical Applications, E-Commerce, Marketing, and Theoretical Aspects, pp.374-388, 2008.

M. J. Zaki, Efficient enumeration of frequent sequences, 7th ACM International Conference on Information and Knowledge Management, 1998.

F. Zhu, X. Yan, J. Han, Y. , and P. S. , Efficient discovery of frequent approximate sequential patterns, Proceedings of the 2007 Seventh IEEE International Conference on Data Mining, pp.751-756, 2007.