Adaptive change in the resource-exploitation traits of a generalist consumer: the evolution and coexistence of generalists and specialists, Evolution, vol.60, pp.427-439, 2006. ,
Plant-virus interactions and the agro-ecological interface, European Journal of Plant Pathology, vol.138, pp.529-547, 2014. ,
Seasonality and the dynamics of infectious diseases, Ecology Letters, vol.9, pp.467-484, 2006. ,
Periodicity in host availability does not account for evolutionary branching as observed in many plant pathogens: an application to Gaeumannomyces graminis var. tritici, Evolutionary Ecology, vol.87, pp.121-137, 2010. ,
Sustainable pest regulation in agricultural landscapes: a review on landscape composition, biodiversity and natural pest control, Proceedings of the Royal Society of London. Serie B, vol.273, pp.1715-1727, 2006. ,
Ecological intensification: harnessing ecosystem services for food security, Trends in Ecology & Evolution, vol.28, pp.230-238, 2013. ,
Computation of the integrated flow of particles between polygons, Environmental Modelling & Software, vol.24, pp.843-849, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02662047
Plant-parasite coevolution: bridging the gap between genetics and ecology, Annual Review of Phytopathology, vol.49, pp.345-367, 2011. ,
The structure of pathogen populations in natural plant communities, Annual Review of Phytopathology, vol.31, pp.305-323, 1993. ,
Pathogen evolution across the agroecological interface: implications for disease management, Evolutionary Applications, vol.1, pp.57-65, 2008. ,
What have we learned from studies of wild plant-pathogen associations? -the dynamic interplay of time, space and life-history, European Journal of Plant Pathology, vol.138, pp.417-429, 2014. ,
Guiding deployment of resistance in cereals using evolutionary principles, Evolutionary Applications, vol.7, pp.609-624, 2014. ,
Some aspects of the summer and winter ecology of wheat rust fungi, Plant Disease Reporter, vol.53, pp.648-651, 1969. ,
A meta-analysis of crop pest and natural enemy response to landscape complexity, Ecology Letters, vol.14, pp.922-932, 2011. ,
Evolution of specialization in a spatially continuous environment, Journal of Evolutionary Biology, vol.23, pp.1090-1099, 2010. ,
Distance-limited dispersal promotes coexistence at habitat boundaries: reconsidering the competitive exclusion principle, Ecology Letters, vol.14, pp.260-266, 2011. ,
Epidemiology of wheat leaf and stem rust in the central Great Plains of the USA, Annual Review of Phytopathology, vol.38, pp.491-513, 2000. ,
Durable strategies to deploy plant resistance in agricultural landscapes, New Phytologist, vol.193, pp.1064-1075, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00848412
Local adaptation and the geometry of host-parasite coevolution, Ecology Letters, vol.5, pp.246-256, 2002. ,
Trade-offs in host range evolution of plant viruses, Plant Pathology, vol.62, pp.2-9, 2013. ,
Genetic diversity and host differentiation among isolates of Phytophthora infestans from cultivated potato and wild solanaceous hosts in Peru, Plant Pathology, vol.54, pp.740-748, 2005. ,
Distribution of pathotypes with regard to host cultivars in French wheat leaf rust populations, Phytopathology, vol.96, pp.264-273, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02663572
Seasonality and the evolutionary divergence of plant parasites, Ecology, vol.92, pp.2159-2166, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00729263
Ecology at the mesoscale: the influence of regional processes on local communities, Species Diversity in Ecological Communities, pp.77-88, 1993. ,
Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control, Virus Research, vol.141, pp.113-130, 2009. ,
Ecological and evolutionary effects of fragmentation on infectious disease dynamics, Science, vol.344, pp.1289-1293, 2014. ,
A completely random T-tessellation model and Gibbsian extensions, Spatial Statistics, vol.6, pp.118-138, 2013. ,
Wheat leaf and stem rust in the United States, Australian Journal of Agricultural Research, vol.58, pp.631-638, 2007. ,
Spatial scale of local adaptation in a plant-pathogen metapopulation, Journal of Evolutionary Biology, vol.18, pp.930-938, 2005. ,
Epidemiological and evolutionary consequences of life-history trade-offs in pathogens, Plant Pathology, vol.62, pp.96-105, 2013. ,
Variation and selection of quantitative traits in plant pathogens, Annual Review of Phytopathology, vol.50, pp.319-338, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01019819
The threat of wild habitat to scab resistant apple cultivars, Plant Pathology, vol.60, pp.621-630, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02652093
Structure and variation in the wild-plant pathosystem: Lactuca serriola-Bremia lactucae, European Journal of Plant Pathology, vol.122, pp.127-146, 2008. ,
When virulence originates from non-agricultural hosts: new insights into plant breeding. Infection, Genetics and Evolution, vol.27, pp.521-529, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01210001
Edges in agricultural landscapes: species interactions and movement of natural enemies, PLoS ONE, vol.8, p.59658, 2013. ,
A note on semi-discrete modelling in the life sciences, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol.367, pp.4779-4799, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02669019
Modelling the influence of winter frosts on the development of the stem canker of red oak, caused by Phytophthora cinnamomi, Annals of Forest Science, vol.53, pp.369-382, 1996. ,
Evolution of pathogen aggressiveness under cultivar mixtures, Plant Pathology, vol.58, pp.378-388, 2009. ,
Pathogen population genetics, evolutionary potential, and durable resistance, Annual Review of Phytopathology, vol.40, pp.349-379, 2002. ,
Uredospore production and sporulation period of Puccinia recondita f. sp. triticina on primary leaves of wheat, Netherlands Journal of Plant Pathology, vol.76, pp.267-276, 1970. ,
Host switching between native and non-native trees in a population of the canker pathogen Chrysoporthe cubensis from Colombia, Plant Pathology, vol.62, pp.642-648, 2013. ,
, Ecosystems and Human Wellbeing: Synthesis, 2005.
Disease dynamics in plant communities, Disease Ecology: Community Structure and Pathogen Dynamics, pp.58-72, 2006. ,
The influence of host diversity and composition on epidemiological patterns at multiple spatial scales, Ecology, vol.93, pp.1095-1105, 2012. ,
Predicting wheat leaf rust severity using planting date, genetic resistance, and weather variables, Plant Disease, vol.83, pp.381-384, 1999. ,
Effect of host unit area on development of focal epidemics of bean rust and common maize rust in mixtures of resistant and susceptible plants, Phytopathology, vol.76, pp.895-900, 1986. ,
Landscape heterogeneity and disease spread: experimental approaches with a plant pathogen, Ecological Applications, vol.21, pp.321-328, 2011. ,
Influence of cultivated landscape composition on variety resistance: an assessment based on wheat leaf rust epidemics, New Phytologist, vol.191, pp.1095-1107, 2011. ,
Dynamics of adaptation in spatially heterogeneous metapopulations, PLoS ONE, vol.8, p.54697, 2013. ,
Pathogen population dynamics in agricultural landscapes: the Ddal modelling framework, Infection, Genetics and Evolution, vol.27, pp.509-520, 2014. ,
Evolution of pathogen specialisation in a host metapopulation: joint effects of host and pathogen dispersal, Plos Computational Biology, vol.10, p.1003633, 2014. ,
Can epidemic control be achieved by altering landscape connectivity in agricultural systems?, Ecological Modelling, vol.284, pp.35-47, 2014. ,
Aggressiveness and its role in the adaptation of plant pathogens, Plant Pathology, vol.58, pp.409-424, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02668732
Linking winter conditions to regional disease dynamics in a wild plant-pathogen metapopulation, New Phytologist, vol.205, pp.1142-1152, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01123954
Ecosystem services and agriculture: tradeoffs and synergies, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol.365, pp.2959-2971, 2010. ,
, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2014.
Live where you thrive: joint evolution of habitat choice and local adaptation facilitates specialization and promotes diversity, The American Naturalist, vol.174, pp.141-169, 2009. ,
Effects of barberry eradication on stem rust in the United States, Plant Disease, vol.66, pp.177-181, 1982. ,
Neutral drift and polymorphism in gene-for-gene systems, Ecology Letters, vol.8, pp.925-932, 2005. ,
Clone mixtures and a pacemaker: new facets of red-queen theory and ecology, Proceedings of the Royal Society of London. Serie B, vol.269, pp.761-772, 2002. ,
Richness and composition of niche-assembled viral pathogen communities, PLoS ONE, vol.8, p.55675, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02647573
Biotic interactions, ecological knowledge and agriculture, Philosophical Transactions of the Royal Society of London. Series B, vol.363, pp.717-739, 2008. ,
, Plant Disease, vol.88, pp.703-708, 2001.
Influence of host diversity on development of epidemics: an evaluation and elaboration of mixture theory, Phytopathology, vol.95, pp.328-338, 2005. ,
Invasion of Phytophthora infestans at the landscape level: how do spatial scale and weather modulate the consequences of spatial heterogeneity in host resistance, Phytopathology, vol.100, pp.1146-1161, 2010. ,
Co-evolutionary hot and cold spots of selective pressure move in space and time, Journal of Ecology, vol.99, pp.634-641, 2011. ,
Effect of hosts on competition among clones and evidence of differential selection between pathogenic and saprophytic phases in experimental populations of the wheat pathogen Phaeosphaeria nodorum, BMC Evolutionary Biology, vol.11, p.188, 2011. ,
The origins of plant pathogens in agro-ecosystems, Annual Review of Phytopathology, vol.46, pp.75-100, 2008. ,
Early stages of Septoria tritici blotch epidemics of winter wheat: build-up, overseasoning, and release of primary inoculum, Plant Pathology, vol.60, pp.166-177, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02652259
Ecological and evolutionary implications of spatial heterogeneity during the off-season for a wild plant pathogen, New Phytologist, vol.202, pp.297-308, 2014. ,
Spatial heterogeneity, frequencydependent selection and polymorphism in host-parasite interactions, BMC Evolutionary Biology, vol.11, pp.319-334, 2011. ,
Specific hypotheses on the geographic mosaic of coevolution, The American Naturalist, vol.153, pp.1-14, 1999. ,
Host-pathogen dynamics in a metapopulation context: the ecological and evolutionary consequences of being spatial, Journal of Ecology, vol.85, pp.743-753, 1997. ,
The spatial scale of pathogen dispersal: consequences for disease dynamics and persistence, Evolutionary Ecology Research, vol.1, pp.681-701, 1999. ,
Evolution of gene-for-gene systems in metapopulations: the effect of spatial scale of host and pathogen dispersal, Plant Pathology, vol.51, pp.169-184, 2002. ,
Coevolution of symbiotic mutualists and parasites in a community context, Trends in Ecology & Evolution, vol.22, pp.120-126, 2007. ,
URL : https://hal.archives-ouvertes.fr/halsde-00450494
Evolution in agriculture: the application of evolutionary approaches to the management of biotic interactions in agro-ecosystems, Evolutionary Applications, vol.4, pp.200-215, 2011. ,
Multifunctional shade-tree management in tropical agroforestry landscapes -a review, Journal of Applied Ecology, vol.48, pp.619-629, 2011. ,
Global food security, biodiversity conservation and the future of agricultural intensification, Biological Conservation, vol.151, pp.53-59, 2012. ,
Fusarium species and Fusarium wilt pathogens associated with native Gossypium populations in Australia, Mycological Research, vol.108, pp.35-44, 2004. ,
Local origin of two vegetative compatibility groups of Fusarium oxysporum f. sp vasinfectum in Australia, Evolutionary Applications, vol.3, pp.505-524, 2010. ,
Wylie 2007. Virus impact at the interface of an ancient ecosystem and a recent agroecosystem: studies on three legume-infecting potyviruses in the southwest Australian floristic region, Plant Pathology, vol.56, pp.729-742 ,
Interactions between weeds and cultivated plants as related to management of plant pathogens, Weed Science, vol.53, pp.914-917, 2005. ,
Landscape structure and habitat management differentially influence insect natural enemies in an agricultural landscape, Agriculture Ecosystems and Environment, vol.152, pp.40-49, 2012. ,
Experimental measures of pathogen competition and relative fitness, Annual Review of Phytopathology, vol.51, pp.131-153, 2013. ,
Local adaptation and effect of host genotype on the rate of pathogen evolution: an experimental test in a plant pathosystem, Journal of Evolutionary Biology, vol.15, pp.634-647, 2002. ,
Achieving sustainable plant disease management through evolutionary principles, Trends in Plant Science, vol.19, pp.570-575, 2014. ,
Random Clustered Random Clustered Intercept 1.78 (1.75,1.82) 1.67 (1.64,1.70) 2.20 (2.19,2.21) 2.13 (2.12,2.14) Wild host proportion (q) À0.24 (À0.26, À0.21) À0.17 (À0.19, À0.14) À0.25 (À0.26, À0.24) À0.21 (À0.22, À0.20) Trade-off shape (b) 0.62 (0.58, Nature, vol.406, pp.718-722, 2000. ,