A. Wanner, M. Salathé, and T. G. O'riordan, Mucociliary clearance in the airways, American Journal of Respiratory and Critical Care Medicine, vol.154, pp.1868-1902, 1996.

P. Chanez, Severe asthma is an epithelial disease, European Respiratory Journal, vol.25, pp.945-946, 2005.

J. C. Hogg, The nature of small-airway obstruction in chronic obstructive pulmonary disease, New England Journal of Medicine, vol.350, pp.2645-2653, 2004.

J. Regnis, Mucociliary clearance in patients with cystic fibrosis and in normal subjects, American Journal of Respiratory and Critical Care Medicine, vol.150, pp.66-71, 1994.

R. C. Boucher, Airway surface dehydration in cystic fibrosis: pathogenesis and therapy, Annual Review of Medicine, vol.58, pp.157-170, 2007.

H. Matsui, S. H. Randell, S. W. Peretti, C. W. Davis, and R. C. Boucher, Coordinated clearance of periciliary liquid and mucus from airway surfaces, The Journal of Clinical Investigation, vol.102, pp.1125-1131, 1998.

M. Khelloufi, Spatiotemporal organization of cilia drives multiscale mucus swirls in model human bronchial epithelium, Scientific Reports, vol.8, p.2447, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01821276

J. B. Wallingford, Planar cell polarity signaling, cilia and polarized ciliary beating, Current Opinion in Cell Biology, vol.22, pp.597-604, 2010.

N. Spassky and A. Meunier, The development and functions of multiciliated epithelia, Nature Reviews Molecular Cell biology, vol.18, p.423, 2017.

R. Faubel, C. Westendorf, E. Bodenschatz, and G. Eichele, Cilia-based flow network in the brain ventricles, Science, vol.353, pp.176-178, 2016.

B. Guirao and J. Joanny, Coupling between hydrodynamic forces and planar cell polarity orients mammalian motile cilia, Nature Cell Biology, vol.12, p.341, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00555153

B. Mitchell, R. Jacobs, J. Li, S. Chien, and C. Kintner, A positive feedback mechanism governs the polarity and motion of motile cilia, Nature, vol.447, p.97, 2007.

T. Vicsek and A. Zafeiris, Collective motion, Physics Reports, vol.517, pp.71-140, 2012.

D. J. Sumpter, Collective animal behavior, 2010.

A. Bricard, Emergent vortices in populations of colloidal rollers, Nature Communications, vol.6, pp.1-8, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01292102

D. Saintillan, Rheology of active fluids, Annual Review of Fluid Mechanics, vol.50, pp.563-592, 2018.

T. Vicsek, A. Czirók, E. Ben-jacob, I. Cohen, and O. Shochet, Novel type of phase transition in a system of self-driven particles, Physical Review Letters, vol.75, p.1226, 1995.

N. Uchida and R. Golestanian, Synchronization and collective dynamics in a carpet of microfluidic rotors, Physical Review Letters, vol.104, p.178103, 2010.

J. Elgeti and G. Gompper, Emergence of metachronal waves in cilia arrays, Proceedings of the National Academy of Sciences, vol.110, pp.4470-4475, 2013.

B. Guirao and J. Joanny, Spontaneous creation of macroscopic flow and metachronal waves in an array of cilia, Biophysical J, vol.92, pp.1900-1917, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00022051

J. Park, Unjamming and cell shape in the asthmatic airway epithelium, Nature materials, vol.14, pp.1040-1048, 2015.

E. L. Rawlins and B. L. Hogan, Ciliated epithelial cell lifespan in the mouse trachea and lung, American Journal of Physiology-Lung Cellular and Molecular Physiology, vol.295, pp.231-234, 2008.

Y. Ding, J. C. Nawroth, M. J. Mcfall-ngai, and E. Kanso, Mixing and transport by ciliary carpets: a numerical study, Journal of Fluid Mechanics, vol.743, pp.124-140, 2014.

S. Chateau, J. Favier, U. D'ortona, and S. Poncet, Transport efficiency of metachronal waves in 3d cilium arrays immersed in a twophase flow, Journal of Fluid Mechanics, vol.824, pp.931-961, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01592834

T. Raman, Quality control in microarray assessment of gene expression in human airway epithelium, BMC genomics, vol.10, p.493, 2009.

M. R. Staudt, C26 tobacco: How it harms us and more reasons to quit: Smoking is associated with a loss of ciliated cells throughout the airways, American Journal of Respiratory and Critical Care Medicine, vol.189, p.1, 2014.

B. Button, A periciliary brush promotes the lung health by separating the mucus layer from airway epithelia, Science, vol.337, pp.937-941, 2012.

S. K. Lai, Y. Wang, D. Wirtz, and J. Hanes, Micro-and macrorheology of mucus, Advanced Drug Delivery Reviews, vol.61, pp.86-100, 2009.

D. B. Hill, Force generation and dynamics of individual cilia under external loading, Biophysical journal, vol.98, pp.57-66, 2010.

J. Rutland, L. Morgan, and R. De-iongh, Respiratory ciliary dysfunction, Pediatric respiratory medicine, pp.979-987, 2008.

W. Foster, E. Langenback, and E. Bergofsky, Measurement of tracheal and bronchial mucus velocities in man: relation to lung clearance, Journal of Applied Physiology, vol.48, pp.965-971, 1980.

E. R. Weibel, A. F. Cournand, and D. W. Richards, Morphometry of the human lung, vol.1, 1963.

C. Karamaoun, A. Van-muylem, and B. Haut, Modeling of the nitric oxide transport in the human lungs, Frontiers in Physiology, vol.7, p.255, 2016.

Z. Püspöki, M. Storath, D. Sage, and M. Unser, Transforms and operators for directional bioimage analysis: a survey, Focus on Bio-Image Informatics, pp.69-93, 2016.

T. Krüger, The Lattice Boltzmann Method: principles and practice, 2017.

Z. Guo, C. Zheng, and B. Shi, Discrete lattice effects on the forcing term in the lattice boltzmann method, Physical Review E, vol.65, p.46308, 2002.