N6-Methyladenosine inhibits local ribonucleolytic cleavege to stabilize mRNAs in Arabidopsis, Cell Rep, vol.25, pp.1146-1157, 2018. ,
The composition of the Arabidopsis RNA polymerase II transcript elongation complex reveals the interplay between elongation and mRNA processing factors, Plant Cell, vol.29, pp.854-870, 2017. ,
Taking RISC with AGO hookers, Curr Opin Plant Biol, vol.14, pp.594-600, 2011. ,
) m 6 A RNA modification controls cell fate transition in mammalian embryonic stem cells, Cell Stem Cell, vol.15, pp.707-719, 2014. ,
Epigenetic control of an endogenous gene family is revealed by a novel blue fluoresecent mutant of Arabidopsis, Cell, vol.83, pp.725-734, 1995. ,
Readers of the m6A epistranscriptomic code, Biochim Biophys Acta Gene Regul Mech, vol.1862, pp.329-342, 2019. ,
Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N 6 -adenosine)-methyltransferase, RNA, vol.3, pp.1233-1247, 1997. ,
Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit, Plant Physiol, vol.140, pp.1507-1521, 2006. ,
Topology of the human and mouse m 6 A RNA methylomes revealed by m 6 A-seq, Nature, vol.485, pp.201-206, 2012. ,
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA, PLoS Genet, vol.9, p.1003867, 2013. ,
Rapide establishment of genetic incompatibility through natural epigenetic variation, Curr Biol, vol.22, pp.326-331, 2012. ,
Retrotransposition of R2 elements in somatic nuclei during the early development of Drosophila, Mobile DNA, vol.2, pp.11-15, 2011. ,
Genic C-methylation in soybean is associated with gene paralogs relocated to transposable element-rich pericentromeres, Mol Plant, vol.5, pp.485-495, 2018. ,
LTRretrotransposons in plants: Engines of evolution, Gene, vol.626, pp.14-25, 2017. ,
Ago hook and RNA helicase motifs underpin dual roles for SDE3 in antiviral defense and silencing of nonconserved intergenic regions, Mol Cell, vol.48, pp.109-120, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00742632
M 6 A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation, Science, vol.347, pp.1002-1006, 2015. ,
M 6 A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination, Nature, vol.540, pp.301-304, 2016. ,
Drosophila inducer of meiosis 4 (IME4) is required for Notch signaling during oogenesis, Proc Natl Acad Sci, vol.108, pp.14855-14860, 2011. ,
Histone H3 trimethylation at lysine 36 guides m 6 A RNA modification co-transcriptionally, Nature, vol.567, pp.414-419, 2019. ,
Transcription activation of retrotransposons alters the expression of adjacent genes in wheat, Nat Genet, vol.33, pp.102-106, 2003. ,
Nuclear m 6 A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development, PLoS Genet, vol.14, p.1007412, 2018. ,
Mobile elements: Drivers of genome evolution, Science, vol.303, pp.626-632, 2004. ,
A majority of m 6 A residues are in the last exons, allowing the potential for 3' UTR regulation, Genes Dev, vol.29, pp.2037-2053, 2015. ,
M6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover, Genes Dev, vol.31, pp.990-1006, 2017. ,
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions, Genome Biol, vol.14, p.36, 2013. ,
Araport: The Arabidopsis information portal, Nucleic Acids Res, vol.43, pp.1003-1009, 2015. ,
Fast gapped-read alignment with Bowtie 2, Nat Methods, vol.9, pp.357-359, 2012. ,
Establishing, maintaining and modifying DNA methylation patterns in plants and animals, Nat Rev Genet, vol.11, pp.204-220, 2010. ,
) m 6 A modulates neuronal functions and sex determination in Drosophila, Nature, vol.540, pp.242-247, 2016. ,
D27E mutation of VTC1 impairs the intercation with CSN5B and enhances ascorbic acid biosynthesis and seedling growth in Arabidopsis, Plant Mol Biol, vol.92, pp.473-482, 2016. ,
The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC, Mol Cell, vol.28, pp.398-407, 2007. ,
A METTL3-METTL14 complex mediates mammalian nuclear RNA N 6 -adenosine methylation, Nat Chem Biol, vol.10, pp.93-95, 2014. ,
Integration of developmental and environmental signals via a polyadenylation factor in Arabidopsis, PLoS One, vol.9, p.115779, 2014. ,
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method, Methods, vol.25, pp.402-408, 2001. ,
Unique features of the m6A methylome in Arabidopsis thaliana, Nat Commun, vol.5, p.5630, 2014. ,
The recruitment of the Saccharomyces cerevisiae Paf1 complex to active genes requires a domain of Rtf1 that directly interacts with SPT4-SPT5 complex, Mol Cell Biol, vol.33, pp.3259-3273, 2013. ,
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons, Cell, vol.149, pp.1635-1646, 2012. ,
Rethinking m 6 A readers, writers, and erasers, Annu Rev Cell Dev Biol, vol.33, pp.319-342, 2017. ,
Evolution of gene duplication in plants, Plant Physiol, vol.171, pp.2294-2316, 2016. ,
M 6 A RNA methylation promotes XIST-mediated transcriptional repression, Nature, vol.537, pp.369-373, 2016. ,
NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis, Mol Cell, vol.48, pp.121-132, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00742627
GDP-mannose pyrophosphorylase is a genetic determinant of ammonium sensitivity in Arabidopsis thaliana, Proc Natl Acad Sci, vol.105, pp.18308-18313, 2008. ,
BEDTools: A flexible suite of utilities for comparing genomic features, Bioinformatics, vol.26, pp.841-842, 2010. ,
Gene duplication as a driver of plant morphogenetic evolution, Curr Opin Plant Biol, vol.17, pp.43-48, 2014. ,
3' rapid amplification of cDNA ends (3' RACE) using Arabidopsis samples, Bio-protocol, vol.5, p.1604, 2015. ,
YTHDC1 mediates nuclear export of N 6 -methyladenosine methylated mRNAs, vol.6, p.31311, 2017. ,
Identification of factors required for m 6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI, New Phytol, vol.215, pp.157-172, 2017. ,
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana, Science, vol.319, pp.462-465, 2008. ,
Mechanism for full-lenght RNA processing of Arabidopsis genes containing intragenic heterochromatin, Nat Commun, vol.4, p.2301, 2013. ,
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis, Cell, vol.155, pp.1409-1421, 2013. ,
The functional topography of the Arabidopsis genome is organized in a reduced number of linear linear motifs of chromatin states, Plant Cell, vol.26, pp.2351-2366, 2014. ,
Mono-and Bi-cistronic chimeric mRNAs in Arabidopsis and rice genomes, Appl Comput Math, vol.9, pp.66-81, 2010. ,
N6-methyladenosine RNA modification regulates shoot stem cell fate in Arabidopsis, Dev Cell, vol.38, pp.186-200, 2016. ,
The end of the message: Multiple protein-RNA interactions define the mRNA polyadenylation site, Genes Dev, vol.29, pp.889-897, 2015. ,
RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription, Proc Natl Acad Sci, vol.108, pp.8508-8513, 2011. ,
Easyfig: A genome comparison visualizer, Bioinformatics, vol.27, pp.1009-1010, 2011. ,
Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome, RNA, vol.11, pp.128-138, 2005. ,
Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis, Plant Cell, vol.24, pp.4676-4388, 2012. ,
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation, Nat Biotechnol, vol.28, pp.511-515, 2010. ,
Molecular and genetic analyses of four nonfunctional s haplotype variants derived from a common ancestral s haplotype identified in sour cherry, Prunus cerasus L.). Genetics, vol.184, pp.411-427, 2010. ,
Emerging roles of chromatin in the maintenance of genome organization and function in plants, Genome Biol, vol.18, p.96, 2017. ,
RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1, Proc Natl Acad Sci, vol.110, pp.15467-15472, 2013. ,
MCScanX-transposed: Detecting transposed gene duplications based on multiple colinearity scans, Bioinformatics, vol.29, pp.1458-1460, 2013. ,
N 6 -methyladenosine-dependent regulation of messenger RNA stability, Nature, vol.505, pp.117-120, 2014. ,
N(6)-methyladenosine modulates messenger RNA translation efficiency, Cell, vol.161, pp.1388-1399, 2015. ,
Structural basis for SPT5-mediated recrutment of the Paf1 complex to chromatin, Proc Natl Acad Sci, vol.110, pp.17290-17295, 2013. ,
Regulation of m 6 A transcripts by the 3'-5' RNA helicase YTHDC2 is essential for a successful meiotic program in the mammalian germline, Mol Cell, vol.68, pp.374-387, 2017. ,
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation, Proc Natl Acad Sci, vol.108, pp.12533-12538, 2011. ,
Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana, BMC Genomics, vol.16, pp.511-524, 2015. ,
Readers, writers and erasers of N 6 -methylated adenosine modification, Curr Opin Struct Biol, vol.47, pp.67-76, 2017. ,
RNA m6A methylation regulates the ultraviolet-induced DNA damage response, Nature, vol.543, pp.573-576, 2017. ,
A retrotransposon-mediated gene duplication underlis morphological variation of tomato fruit, Science, vol.319, pp.1527-1530, 2008. ,
Nuclear m 6 A reader YTHDC1 regulates mRNA splicing, Mol Cell, vol.61, pp.507-519, 2016. ,
Alternative polyadenylation and gene expression regulation in plants, Wiley Interdiscip Rev RNA, vol.2, pp.445-458, 2011. ,
VIRMA mediates preferential m 6 A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation, Cell Discov, vol.4, p.10, 2018. ,
Transposable element insertion and epigenetic modification cause the multiallelic variation in the expression of FAE1 in Sinapis alba, Plant Cell, vol.26, pp.2648-2659, 2014. ,
MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor, Plant Cell, vol.20, pp.1278-1288, 2008. ,
LINE-1-like retrotransposons contribute to RNA-based gene duplication in dicots, Sci Rep, vol.21, p.24755, 2016. ,
, License: This article is available under a Creative Commons License