Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

Karel Brinda (1) , Alanna Callendrello (1) , Kevin C Ma (1) , Derek R Macfadden (1) , Robyn Lee (1) , Themoula Charalampous (2) , Lauren Cowley (1) , Crista B Wadsworth (1) , Yonatan H Grad (1) , Gregory Kucherov (3) , Justin O'Grady (4) , Michael Baym (1) , William P Hanage (1)

1 Harvard University
2 Norwich Medical School
3 LIGM - Laboratoire d'Informatique Gaspard-Monge
4 QIB - Quadram Institute Bioscience [Norwich, U.K.]

Domaines: Bio-informatique [q-bio.QM]

Karel Brinda, Alanna Callendrello, Kevin C Ma, Derek R Macfadden, Robyn Lee, et al.. Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nature Microbiology, 2020, ⟨10.1038/s41564-019-0656-6⟩. ⟨hal-02416034⟩