Data structures based on k-mers for querying large collections of sequencing datasets

Camille Marchet (1) , Christina Boucher (2) , Simon J Puglisi (3) , Paul Medvedev (4) , Mikaël Salson (1) , Rayan Chikhi (5)

1 BONSAI - Bioinformatics and Sequence Analysis
2 UF|CISE - Department of Computer and Information Science and Engineering [Gainesville]
3 HIIT - Helsinki Institute for Information Technology
4 University of Pennsylvania
5 C3BI - Centre de Bioinformatique, Biostatistique et Biologie Intégrative

Domaines: Bio-informatique [q-bio.QM]

Camille Marchet, Christina Boucher, Simon J Puglisi, Paul Medvedev, Mikaël Salson, et al.. Data structures based on k-mers for querying large collections of sequencing datasets. 2019. ⟨hal-02414162⟩