A. R. Références, P. Stey, . Jain-s, D. Biron, H. Bhatt et al.,

&. Es and C. , Predicting mortality in diabetic icu patients using machine learning and severity indices, AMIA Jt Summits Transl Sci Proc, pp.310-319, 2018.

. Campillo-gimenez-b, C. Buscail, O. Zekri, B. Laguerre, . Le-prisé-e et al., Improving the pre-screening of eligible patients in order to increase enrollment in cancer clinical trials, Trials, vol.16, issue.1, pp.1-15, 2015.

. W. Chapman-w, . M. Nadkarni-p, L. Hirschman, . W. D'avolio-l, and . K. Savova-g,

. Uzuner-o, Overcoming barriers to nlp for clinical text : the role of shared tasks and the need for additional creative solutions, J Am Med Inform Assoc, vol.18, issue.5, pp.540-543, 2011.

C. Z. Purushotham, S. Cho-k, . &. Sontag-d, and . Liu-y, Recurrent neural networks for multivariate time series with missing values, Sci Rep, vol.8, issue.1, p.6085, 2018.

. Claveau-v, . E. Silva-oliveira-l, G. Bouzillé, M. Cuggia, and . M. Cabral-moro-c,

. Grabar-n, Numerical eligibility criteria in clinical protocols : annotation, automatic detection and interpretation, AIME (Artifical Intelligence in Medicine in Europe), 2017.

. B. Cohen-k, J. Xia, C. Roeder, and . E. Hunter-l, Reproducibility in natural language processing : A case study of two r libraries for mining pubmed/medline, LREC Int Conf Lang Resour Eval, pp.6-12, 2016.

C. F. Tabak-l, Nih plans to enhance reproducibility, Nature, vol.505, pp.612-613, 2014.

C. Dalloux, . Claveau-v, . &. Grabar-n, and . Moro-c, Portée de la négation : détection par apprentissage supervisé en français et portugais brésilien, pp.1-6, 2018.

P. Embi, C. J. Jain-a, and . Harris-c, Development of an electronic health recordbased clinical trial alert system to enhance recruitment at the point of care, Ann Symp Am Med Inform Assoc (AMIA), pp.231-266, 2005.

M. Feng, J. Mcsparron, D. Kien, . Stone-d, . Roberts-d et al., Transthoracic echocardiography and mortality in sepsis : analysis of the mimic-iii database, Intensive Care Med, vol.44, issue.6, pp.884-892, 2018.

F. B. Gheorghe-a, . Moore-d, and . Wilson-s.-&-damery-s, Improving the recruitment activity of clinicians in randomised controlled trials : A systematic review, BMJ Open, vol.2, issue.1, pp.1-14, 2012.

. Gabriel-r, . Kuo-t, J. &. Mcauley, and . Hsu-c, Identifying and characterizing highly similar notes in big clinical note datasets, J Biomed Inform, vol.82, pp.63-69, 2018.

. Goeuriot-l, . Kelly-l, . Li-w, J. Palotti, P. Pecina et al., Share/clef ehealth evaluation lab 2014, task 3 : User-centred health information retrieval, CLEF, pp.43-61, 2014.

. Grabar-n and . Claveau-v.-&-dalloux-c, Cas : French corpus with clinical cases, LOUHI 2018, pp.1-12, 2018.

C. Grouin and . Griffon-n.-&-névéol-a, Is it possible to recover personal health information from an automatically de-identified corpus of French EHRs ?, Proc of LOUHI, 2015.

. Grouin-c.-&-zweigenbaum-p, Automatic de-identification of french clinical records : Comparison of rule-based and machine-learning approches. In Stud Health Technol Inform, Proc of MedInfo, vol.192, pp.476-80, 2013.

. Hamon-t.-&-grabar-n, Linguistic approach for identification of medication names and related information in clinical narratives, J Am Med Inform Assoc, vol.17, issue.5, pp.549-54, 2010.

. E. Johnson-a, . J. Pollard-t, W. H. Shen-l, . Lehman-l, M. Feng et al., MIMIC-iii, a freely accessible critical care database, pp.1-9, 2016.

. Kang-t, . Zhang-s, Y. Tang, . W. Hruby-g, . Rusanov-a et al., , 2017.

, EliIE : An open-source information extraction system for clinical trial eligibility criteria, J Am Med Inform Assoc, vol.24, issue.6, pp.1062-1071

K. L. Goeuriot, L. Suominen, H. L. Mowery-d, S. Velupillai, . W. Chapman-w et al., Overview of the share/clef ehealth evaluation lab 2013, CLEF, 2013.

. W. Kuhn-h and . Yaw-b, The hungarian method for the assignment problem, Naval Research Logistic Quarterly, vol.2, pp.83-97, 1955.

. Lavergne-t, . &. Cappé-o, and . Yvon-f, Practical very large scale CRFs, Proceedings the 48th Annual Meeting of the Association for Computational Linguistics (ACL), pp.504-513, 2010.

L. M. Fei, Z. Zeng, M. Wu-f, Y. Li, Y. Pan et al., Automated ICD-9 coding via a deep learning approach, IEEE/ACM Trans Comput Biol Bioinform, 2018.

. Meystre-s, . Shen-s, and . Hofmann-d.-&-gundlapalli-a, Can physicians recognize their own patients in de-identified notes ?, Stud Health Technol Inform 205, pp.778-82, 2014.

. Perotte-a, . Pivovarov-r, K. Natarajan, N. Weiskopf, and . Wood-f.-&-elhadad-n, , 2014.

, Diagnosis code assignment : models and evaluation metrics, J Am Med Inform Assoc, vol.21, pp.231-237

W. E. Robertson-s and . Hancock-beaulieu-m, Okapi at TREC-7 : Automatic Ad Hoc, Filtering, VLC and Interactive, Proc. of the 7 th Text Retrieval Conference, TREC-7, pp.199-210, 1998.

P. Ruch, . H. Baud-r, . Rassinoux-a.-m, P. Bouillon, and . Robert-g, Medical document anonymization with a semantic lexicon, Ann Symp Am Med Inform Assoc (AMIA), pp.729-733, 2000.

. Sibanda-t.-&-uzuner-o, Role of local context in de-identification of ungrammatical, fragmented test, NAACL-HLT, 2006.

. Sun-w and . Rumshisky-a.-&-uzuner-Ö, Evaluating temporal relations in clinical text : 2012 i2b2 challenge, JAMIA, vol.20, issue.5, pp.806-813, 2013.

G. Szarvas, V. Vincze, and . Farkas-r.-&-csirik-j, The BioScope corpus : annotation for negation, uncertainty and their scope in biomedical texts, BIONLP, pp.38-45, 2008.

Y. Tsuruoka, Y. Tateishi, K. J. Ohta, T. Mcnaught, and J. Ananiadou-s.-&-tsujii-j, Developing a robust part-of-speech tagger for biomedical text, LNCS, vol.3746, pp.382-392, 2005.

. Uzuner-o, Second i2b2 workshop on natural language processing challenges for clinical records, Ann Symp Am Med Inform Assoc (AMIA), pp.1252-1255, 2008.

. Uzuner-o, Y. &. Luo, and . Szolovits-p, Evaluating the state-of-the-art in automatic deidentification, J Am Med Inform Assoc, vol.14, pp.550-563, 2007.

. Uzuner-o, . R. South-b, . &. Shen-s, and . L. Duvall-s, 2010 i2b2/va challenge on concepts, assertions, and relations in clinical text, J Am Med Inform Assoc, vol.18, issue.5, pp.552-556, 2011.