Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects, Journal of Neuroimaging, vol.28, issue.2, pp.173-182, 2018. ,
Elimination of eddy current artifacts in diffusion-weighted echo-planar images: The use of bipolar gradients, Magnetic Resonance in Medicine, vol.38, issue.6, pp.1016-1021, 1997. ,
Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement, NeuroImage, vol.152, pp.450-466, 2017. ,
Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images, NeuroImage, vol.141, pp.556-572, 2016. ,
Non-linear registration aka Spatial normalisation FMRIB, Neuroimage, vol.45, pp.173-186, 2009. ,
How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging, NeuroImage, vol.20, issue.2, pp.870-888, 2003. ,
An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging, NeuroImage, vol.125, pp.1063-1078, 2016. ,
Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI, NeuroImage, vol.115, pp.245-255, 2015. ,
Statistical artifacts in diffusion tensor MRI (DT-MRI) caused by background noise, Magn. Reson. Med, vol.44, pp.41-50, 2000. ,
Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project, NeuroImage, vol.185, pp.750-763, 2019. ,
Improved tractography using asymmetric fibre orientation distributions, NeuroImage, vol.158, pp.205-218, 2017. ,
The impact of in-scanner head motion on structural connectivity derived from diffusion MRI, NeuroImage, vol.173, pp.275-286, 2018. ,
Motion correction and registration of high b-value diffusion weighted images, Magnetic Resonance in Medicine, vol.67, issue.6, pp.1694-1702, 2011. ,
Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization, NeuroImage, vol.115, pp.269-280, 2015. ,
Eddy current correction in diffusion-weighted imaging using pairs of images acquired with opposite diffusion gradient polarity, Magnetic Resonance in Medicine, vol.51, issue.1, pp.188-193, 2003. ,
The impact of T1 versus EPI spatial normalization templates for fMRI data analyses, Human Brain Mapping, vol.38, issue.11, pp.5331-5342, 2017. ,
Design of multishell sampling schemes with uniform coverage in diffusion MRI, Magnetic Resonance in Medicine, vol.69, issue.6, pp.1534-1540, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00821688
A diffusion tensor imaging tractography atlas for virtual in vivo dissections, Cortex, vol.44, issue.8, pp.1105-1132, 2008. ,
URL : https://hal.archives-ouvertes.fr/inserm-00322865
RESTORE: Robust estimation of tensors by outlier rejection, Magnetic Resonance in Medicine, vol.53, issue.5, pp.1088-1095, 2005. ,
Global tractography of multi-shell diffusion-weighted imaging data using a multi-tissue model, NeuroImage, vol.123, pp.89-101, 2015. ,
An Evaluation of the Use of Magnetic Field Maps to Undistort Echo-Planar Images, NeuroImage, vol.18, issue.1, pp.127-142, 2003. ,
COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography, IEEE Transactions on Medical Imaging, vol.34, issue.1, pp.246-257, 2015. ,
Distortion correction for diffusion-weighted MRI tractography and fMRI in the temporal lobes, Human Brain Mapping, vol.31, issue.10, pp.1570-1587, 2010. ,
Diffusion imaging quality control via entropy of principal direction distribution, NeuroImage, vol.82, pp.1-12, 2013. ,
Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom, NeuroImage, vol.56, issue.1, pp.220-234, 2011. ,
URL : https://hal.archives-ouvertes.fr/inria-00559191
Morphologist 2012: the new morphological pipeline of BrainVISA, Proceedings of the HBM, 2012. ,
Dipy, a library for the analysis of diffusion MRI data, Frontiers in Neuroinformatics, vol.8, p.8, 2014. ,
BrainVISA?: a complete software platform for neuroimaging, Proceedings of the Python in Neuroscience Workshop, 2011. ,
A survey of current trends in diffusion MRI for structural brain connectivity, Journal of Neural Engineering, vol.13, issue.1, p.011001, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01293828
AxTract: Toward microstructure informed tractography, Human Brain Mapping, vol.38, issue.11, pp.5485-5500, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01564041
Towards quantitative connectivity analysis: reducing tractography biases, NeuroImage, vol.98, pp.266-278, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-00991846
The Human Connectome Project's neuroimaging approach, Nature Neuroscience, vol.19, issue.9, pp.1175-1187, 2016. ,
Realistic simulation of artefacts in diffusion MRI for validating post-processing correction techniques, NeuroImage, vol.125, pp.1079-1094, 2016. ,
MR connectomics: principles and challenges, J. Neurosci. Methods, vol.194, pp.34-45, 2010. ,
Correction for distortion of echo-planar images used to calculate the apparent diffusion coefficient, Magnetic Resonance in Medicine, vol.36, issue.6, pp.960-964, 1996. ,
Analysis of the effects of noise, DWI sampling, and value of assumed parameters in diffusion MRI models, Magnetic Resonance in Medicine, vol.78, issue.5, pp.1767-1780, 2017. ,
Effects of image distortions originating from susceptibility variations and concomitant fields on diffusion MRI tractography results, NeuroImage, vol.61, issue.1, pp.275-288, 2012. ,
FSL, NeuroImage, vol.62, issue.2, pp.782-790, 2012. ,
URL : https://hal.archives-ouvertes.fr/inserm-01149484
Correction for geometric distortion in echo planar images from B0 field variations, Magnetic Resonance in Medicine, vol.34, issue.1, pp.65-73, 1995. ,
Characterization of and correction for eddy current artifacts in echo planar diffusion imaging, Magnetic Resonance in Medicine, vol.39, issue.5, pp.801-812, 1998. ,
Twenty-five pitfalls in the analysis of diffusion MRI data, NMR in Biomedicine, vol.23, issue.7, pp.803-820, 2010. ,
How does distortion correction correlate with anisotropic indices? A diffusion tensor imaging study, Magnetic Resonance Imaging, vol.24, issue.10, pp.1369-1376, 2006. ,
Unwarping of unidirectionally distorted EPI images, IEEE Transactions on Medical Imaging, vol.19, issue.2, pp.80-93, 2000. ,
Bootstrap white matter tractography (BOOT-TRAC), NeuroImage, vol.24, issue.2, pp.524-532, 2005. ,
Artifacts and pitfalls in diffusion MRI, J. Magn. Reson. Imaging, vol.24, pp.478-488, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00349658
TheB-matrix must be rotated when correcting for subject motion in DTI data, Magnetic Resonance in Medicine, vol.61, issue.6, pp.1336-1349, 2009. ,
Evaluation of Interpolation Effects on Upsampling and Accuracy of Cost Functions-Based Optimized Automatic Image Registration, International Journal of Biomedical Imaging, vol.2013, pp.1-19, 2013. ,
Toward global tractography, NeuroImage, vol.80, pp.290-296, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00856326
Diffusion Weighted Image Denoising Using Overcomplete Local PCA, PLoS ONE, vol.8, issue.9, p.e73021, 2013. ,
<title>Nonrigid multimodality image registration</title>, Medical Imaging 2001: Image Processing, vol.4322, pp.1609-1620, 2001. ,
Correction of susceptibility artifacts in diffusion tensor data using non-linear registration, Medical Image Analysis, vol.11, issue.6, pp.588-603, 2007. ,
Fast free-form deformation using graphics processing units, Computer Methods and Programs in Biomedicine, vol.98, issue.3, pp.278-284, 2010. ,
Methods, MRI Atlas of Human White Matter, pp.7-13, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00794406
Strengths and weaknesses of state of the art fiber tractography pipelines ? A comprehensive in-vivo and phantom evaluation study using Tractometer, Medical Image Analysis, vol.26, issue.1, pp.287-305, 2015. ,
Imaging brain tumour microstructure, NeuroImage, vol.182, pp.232-250, 2018. ,
Extrapolation-Based References Improve Motion and Eddy-Current Correction of High B-Value DWI Data: Application in Parkinson?s Disease Dementia, PLOS ONE, vol.10, issue.11, p.e0141825, 2015. ,
Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use? Med, Image Anal, vol.26, pp.316-331, 2015. ,
DTIPrep: quality control of diffusion-weighted images, Frontiers in Neuroinformatics, vol.8, p.4, 2014. ,
A measure of curve fitting error for noise filtering diffusion tensor MRI data, J. Magn. Reson, vol.164, pp.1-9, 2003. ,
Correction of off resonance-related distortion in echo-planar imaging using EPI-based field maps, Magnetic Resonance in Medicine, vol.39, issue.2, pp.328-330, 1998. ,
Global fiber reconstruction becomes practical, Neuroimage, vol.54, pp.955-962, 2011. ,
BrainVISA: an extensible software environment for sharing multimodal neuroimaging data and processing tools, NeuroImage, vol.47, p.S163, 2009. ,
The impact of quality assurance assessment on diffusion tensor imaging outcomes in a large-scale population-based cohort, Neuroimage, vol.125, pp.903-919, 2016. ,
Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI, Magnetic Resonance in Medicine, vol.51, issue.1, pp.103-114, 2003. ,
Echo-Planar Imaging, 1998. ,
Correction of high-order eddy current induced geometric distortion in diffusion-weighted echo-planar images, Magnetic Resonance in Medicine, vol.52, issue.5, pp.1184-1189, 2004. ,
Advances in functional and structural MR image analysis and implementation as FSL, Neuroimage, vol.23, pp.208-219, 2004. ,
Advances in diffusion MRI acquisition and processing in the Human Connectome Project, Neuroimage, vol.80, pp.125-143, 2013. ,
A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI, Lecture Notes in Computer Science, vol.5636, pp.664-675, 2009. ,
Assessing the performance of different DTI motion correction strategies in the presence of EPI distortion correction, Hum. Brain Mapp, vol.37, pp.4405-4424, 2016. ,
Characterization and correction of geometric distortions in 814, 2016. ,
Characterization and Correction of Geometric Distortions in 814 Diffusion Weighted Images, PLOS ONE, vol.11, issue.3, p.e0152472, 2016. ,
The WU-Minn Human Connectome Project: An overview, NeuroImage, vol.80, pp.62-79, 2013. ,
Evaluation of Field Map and Nonlinear Registration Methods for Correction of Susceptibility Artifacts in Diffusion MRI, Frontiers in Neuroinformatics, vol.11, p.17, 2017. ,
Comparison of EPI distortion correction methods in diffusion tensor MRI using a novel framework, Med. Image Comput. Comput. Assist. Interv, vol.11, pp.321-329, 2008. ,
Efficacy of Distortion Correction on Diffusion Imaging: Comparison of FSL Eddy and Eddy_Correct Using 30 and 60 Directions Diffusion Encoding, PLoS ONE, vol.9, issue.11, p.e112411, 2014. ,
Spurious group differences due to head motion in a diffusion MRI study, NeuroImage, vol.88, pp.79-90, 2014. ,