A. C. Allison, Protection afforded by sickle-cell trait against subtertian malareal infection, Br Med J, vol.1, pp.290-294, 1954.

A. C. Allison, The sickle-cell and haemoglobin C genes in some African populations, Ann Hum Genet, vol.21, pp.67-89, 1956.

J. B. Haldane, Disease and Evolution, Ric Sci, vol.19, pp.68-76, 1949.

H. Ackerman, S. Usen, M. Jallow, F. Sisay-joof, M. Pinder et al., A comparison of case-control and family-based association methods: the example of sickle-cell and malaria, Ann Hum Genet, vol.69, pp.559-565, 2005.

A. V. Hill, C. E. Allsopp, D. Kwiatkowski, N. M. Anstey, P. Twumasi et al., Common west African HLA antigens are associated with protection from severe malaria, Nature, vol.352, pp.595-600, 1991.

D. P. Kwiatkowski, How malaria has affected the human genome and what human genetics can teach us about malaria, Am J Hum Genet, vol.77, pp.171-192, 2005.

F. B. Livingstone, Anthropological Implications of Sickle Cell Gene Distribution in West Africa, American Anthropologist, vol.60, pp.533-562, 1958.

S. L. Wiesenfeld, Development of agriculture causing increased malaria is bound to gene-pool changes causing malaria reduction, Science, vol.157, pp.1134-1140, 1967.

Y. Chebloune, J. Pagnier, G. Trabuchet, C. Faure, G. Verdier et al., Structural-Analysis of the 5' Flanking Region of the Beta-Globin Gene in African Sickle-Cell Anemia Patients -Further Evidence for 3 Origins of the Sickle-Cell Mutation in Africa, Proc Natl Acad Sci U S A, vol.85, pp.4431-4435, 1988.

M. Currat, G. Trabuchet, D. Rees, P. Perrin, R. M. Harding et al., Molecular analysis of the beta-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the beta(S) Senegal mutation, Am J Hum Genet, vol.70, pp.207-223, 2002.

D. M. Kurnit, Evolution of Sickle Variant Gene, Lancet, vol.1, pp.104-104, 1979.

J. G. Mears, H. M. Lachman, R. Cabannes, K. P. Amegnizin, D. Labie et al., Sickle Gene -Its Origin and Diffusion from West-Africa, J Clin Invest, vol.68, pp.606-610, 1981.

J. Pagnier, J. G. Mears, O. Dunda-belkhodja, K. E. Schaefer-rego, C. Beldjord et al., Evidence for the multicentric origin of the sickle cell hemoglobin gene in Africa, Proc Natl Acad Sci U S A, vol.81, pp.1771-1773, 1984.

D. W. Phillipson, African Archaeology, 2005.

J. Flint, R. M. Harding, J. B. Clegg, and A. J. Boyce, Why Are Some Genetic-Diseases Common -Distinguishing Selection from Other Processes by Molecular Analysis of Globin Gene Variants, Hum Genet, vol.91, pp.91-117, 1993.

E. Solomon and W. F. Bodmer, Evolution of Sickle Variant Gene, Lancet, vol.1, pp.923-923, 1979.

O. C. Stine, G. J. Dover, D. Zhu, and K. D. Smith, The evolution of two west African populations, J Mol Evol, vol.34, pp.336-344, 1992.

D. Shriner and C. N. Rotimi, Whole-Genome-Sequence-Based Haplotypes Reveal Single Origin of the Sickle Allele during the Holocene Wet Phase, Am J Hum Genet, vol.102, pp.547-556, 2018.

M. D. Rasmussen, M. J. Hubisz, I. Gronau, and A. Siepel, Genome-wide inference of ancestral recombination graphs, PLoS Genet, vol.10, 1986.

J. Z. Li, D. M. Absher, H. Tang, A. M. Southwick, A. M. Casto et al., Worldwide human relationships inferred from genome-wide patterns of variation, Science, vol.319, pp.1100-1104, 2008.

E. Patin, M. Lopez, R. Grollemund, P. Verdu, C. Harmant et al., Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America, Science, vol.356, pp.543-546, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02277558

E. Patin, K. J. Siddle, G. Laval, H. Quach, C. Harmant et al., The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists, Nat Commun, vol.5, p.3163, 2014.
URL : https://hal.archives-ouvertes.fr/halshs-01178754

K. A. Frazer, D. G. Ballinger, D. R. Cox, D. A. Hinds, L. L. Stuve et al., A second generation human haplotype map of over 3.1 million SNPs, Nature, vol.449, pp.851-861, 2007.

D. Y. Brandt, J. Cesar, J. Goudet, and D. Meyer, The Effect of Balancing Selection on Population Differentiation: A Study with HLA, Genes. G3 (Bethesda), vol.8, pp.2805-2815, 2018.

M. H. Schierup, X. Vekemans, and D. Charlesworth, The effect of subdivision on variation at multi-allelic loci under balancing selection, Genetical Research, vol.76, pp.51-62, 2000.

B. C. Haller and P. W. Messer, SLiM 2: Flexible, Interactive Forward Genetic Simulations, Mol Biol Evol, vol.34, pp.230-240, 2017.

J. N. Fenner, Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies, Am J Phys Anthropol, vol.128, pp.415-423, 2005.

B. F. Voight, S. Kudaravalli, X. Wen, and J. K. Pritchard, A map of recent positive selection in the human genome, PLoS Biol, vol.4, p.72, 2006.

E. M. Leffler, Z. Y. Gao, S. Pfeifer, L. Segurel, A. Auton et al., Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees, Science, vol.339, pp.1578-1582, 2013.

S. D. Grosse, I. Odame, H. K. Atrash, D. D. Amendah, F. B. Piel et al., Sickle cell disease in Africa: a neglected cause of early childhood mortality, 2011.

, Am J Prev Med, vol.41, pp.398-405

T. C. Matise, F. Chen, W. Chen, . De-la, F. M. Vega et al., A second-generation combined linkage physical map of the human genome, Genome Res, vol.17, pp.1783-1786, 2007.

M. Lopez, A. Kousathanas, H. Quach, C. Harmant, and P. Mouguiama-daouda,

J. M. Hombert, A. Froment, G. H. Perry, L. B. Barreiro, and P. Verdu, The demographic history and mutational load of African hunter-gatherers and farmers, Nat Ecol Evol, vol.2, pp.721-730, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02271464

L. B. Barreiro, M. Ben-ali, H. Quach, G. Laval, E. Patin et al., Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense, PLoS Genet, vol.5, 2009.

S. R. Grossman, I. Shlyakhter, E. K. Karlsson, E. H. Byrne, S. Morales et al., A composite of multiple signals distinguishes causal variants in regions of positive selection, Science, vol.327, pp.883-886, 2010.

A. Ferrer-admetlla, M. Liang, T. Korneliussen, and R. Nielsen, On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure, Mol Biol Evol, vol.31, pp.1275-1291, 2014.

X. Liu, R. T. Ong, E. N. Pillai, A. M. Elzein, K. S. Small et al., Detecting and characterizing genomic signatures of positive selection in global populations, Am J Hum Genet, vol.92, pp.866-881, 2013.

P. C. Sabeti, S. F. Schaffner, B. Fry, J. Lohmueller, P. Varilly et al., Positive natural selection in the human lineage, Science, vol.312, pp.1614-1620, 2006.

M. A. Beaumont, W. Zhang, and D. J. Balding, Approximate Bayesian computation in population genetics, Genetics, vol.162, pp.2025-2035, 2002.

M. Lapierre, A. Lambert, A. , and G. , Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population, Genetics, vol.206, pp.439-449, 2017.

S. Tewari, V. Brousse, F. B. Piel, S. Menzel, and D. C. Rees, Environmental determinants of severity in sickle cell disease, Haematologica, vol.100, pp.1108-1116, 2015.

T. D. Otto, A. Gilabert, T. Crellen, U. Bohme, C. Arnathau et al., Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01960220

, Nat Microbiol, vol.3, pp.687-697

J. E. Crawford and B. P. Lazzaro, The Demographic Histories of the M and S Molecular Forms of Anopheles gambiae s.s, Mol Biol Evol, vol.27, pp.1739-1744, 2010.

E. Patin, G. Laval, L. B. Barreiro, A. Salas, O. Semino et al.,

K. K. Kidd, J. R. Kidd, L. Van-der-veen, and J. M. Hombert, Inferring the 18 demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set, PLoS Genet, vol.5, 2009.

C. W. Kabaria, M. Gilbert, A. M. Noor, R. W. Snow, and C. Linard, The impact of urbanization and population density on childhood Plasmodium falciparum parasite prevalence rates in Africa, Malaria J, vol.16, p.49, 2017.

R. Grollemund, S. Branford, K. Bostoen, A. Meade, C. Venditti et al., Bantu expansion shows that habitat alters the route and pace of human dispersals, Proc Natl Acad Sci U S A, vol.112, pp.13296-13301, 2015.

P. Roberts, C. Hunt, M. Arroyo-kalin, D. Evans, and N. Boivin, The deep human prehistory of global tropical forests and its relevance for modern conservation, Nat Plants, vol.3, p.17093, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02201379

Y. A. Afrane, A. K. Githeko, Y. , and G. , The ecology of Anopheles mosquitoes under climate change: case studies from the effects of deforestation in East African highlands, Ann N Y Acad Sci, vol.1249, pp.204-210, 2012.

C. A. Guerra, R. W. Snow, and S. I. Hay, A global assessment of closed forests, deforestation and malaria risk, Ann Trop Med Parasitol, vol.100, pp.189-204, 2006.

J. F. Walsh, D. H. Molyneux, and M. H. Birley, Deforestation -Effects on Vector-Borne Disease, Parasitology, vol.106, pp.55-75, 1993.

N. J. Fagundes, N. Ray, M. Beaumont, S. Neuenschwander, F. M. Salzano et al., Statistical evaluation of alternative models of human evolution, Proc Natl Acad Sci U S A, vol.104, pp.17614-17619, 2007.