The spatial organization of the human genome, Annu Rev. Genom. Hum. Genet, vol.14, pp.67-84, 2013. ,
The maternal-to-zygotic transition: a play in two acts, Development, vol.136, issue.18, pp.3033-3042, 2009. ,
The zebrafish midblastula transition, Development, vol.119, pp.447-456, 1993. ,
A major developmental transition in early xenopus embryos: II. control of the onset of transcription, Cell, vol.30, issue.3, pp.687-696, 1982. ,
Titration of Four Replication Factors Is Essential for the Xenopus laevis Midblastula Transition, Science, vol.341, issue.6148, pp.893-896, 2013. ,
Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos, Elife, vol.6, p.23326, 2017. ,
Histone titration against the genome sets the DNA-to-cytoplasm threshold for the Xenopus midblastula transition, Proceedings of the National Academy of Sciences, vol.112, issue.10, pp.E1086-E1095, 2015. ,
Zygotic genome activation during the maternal-to-zygotic transition, Annu Rev. Cell Dev. Biol, vol.30, pp.581-613, 2014. ,
Identification of the zebrafish maternal and paternal transcriptomes, Development, vol.140, issue.13, pp.2703-2710, 2013. ,
The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species, Cell Reports, vol.6, issue.2, pp.285-292, 2014. ,
Decision letter: A high-resolution mRNA expression time course of embryonic development in zebrafish, Elife, vol.6, p.30860, 2017. ,
Decision letter: A global change in RNA polymerase II pausing during the Drosophila midblastula transition, vol.2, p.861, 2013. ,
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs, Science, vol.312, pp.75-79, 2006. ,
Localization of ASH1 mRNA particles in living yeast, Mol. Cell, vol.2, pp.437-445, 1998. ,
Transcriptional memory in the drosophila embryo, Curr. Biol, vol.26, pp.212-218, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-02323366
Dynamic visualization of transcription and RNA subcellular localization in zebrafish, Development, vol.142, issue.7, pp.1368-1374, 2015. ,
In vivo dynamics of RNA polymerase II transcription, Nat. Struct. Mol. Biol, vol.14, pp.796-806, 2007. ,
Transcriptional pulsing of a developmental gene, Curr. Biol, vol.16, pp.1018-1025, 2006. ,
Dual functional roles of molecular beacon as a MicroRNA detector and inhibitor, J. Biol. Chem, vol.292, pp.3568-3580, 2017. ,
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Research, vol.23, issue.11, pp.1938-1950, 2013. ,
Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy, Science, vol.329, issue.5994, pp.967-971, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00519834
Cell cycle control in the early embryonic development of aquatic animal species, Comp. Biochem Physiol. C. Toxicol. Pharmacol, vol.178, pp.8-15, 2015. ,
Transcription-dependent induction of G1 phase during the zebra fish midblastula transition, Mol. Cell Biol, vol.17, pp.529-536, 1997. ,
Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition, Nature, vol.503, pp.360-364, 2013. ,
Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy, Science, vol.329, issue.5994, pp.967-971, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00519834
Scratch2 prevents cell cycle re-entry by repressing miR-25 in postmitotic primary neurons, J. Neurosci, vol.33, pp.5095-5105, 2013. ,
Methylation of H3K4 Is Required for Inheritance of Active Transcriptional States, Current Biology, vol.20, issue.5, pp.397-406, 2010. ,
Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing, Nature Genetics, vol.32, issue.3, pp.438-442, 2002. ,
Spatiotemporal coupling and decoupling of gene transcription with DNA replication origins during embryogenesis in, C. elegans. Elife, vol.5, p.21728, 2016. ,
Zygotic genome activation triggers the DNA replication checkpoint at the midblastula transition, Cell, vol.160, pp.1169-1181, 2015. ,
TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish, Curr. Biol, vol.11, pp.282-287, 2001. ,
Chk1 Inhibition of the Replication Factor Drf1 Guarantees Cell-Cycle Elongation at the Xenopus laevis Midblastula Transition, Dev. Cell, vol.42, p.3, 2017. ,
Regulation of zygotic genome activation and DNA damage checkpoint acquisition at the mid-blastula transition, Cell Cycle, vol.13, issue.24, pp.3828-3838, 2014. ,
Code breaking: the RNAPII modification code in pluripotency, Cell Cycle, vol.11, pp.1267-1268, 2012. ,
Imaging of native transcription factors and histone phosphorylation at high resolution in live cells, J. Cell Biol, vol.217, pp.1537-1552, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02349584
Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos, RNA Biol, vol.14, pp.752-760, 2017. ,
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote, Genes Dev, vol.18, pp.1263-1271, 2004. ,
Structure and evolutionary history of a large family of NLR proteins in the zebrafish, Open Biol, vol.6, p.160009, 2016. ,
Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development, RNA, vol.23, pp.1188-1199, 2017. ,
Biogenesis and function of nuclear bodies, Trends Genet, vol.27, pp.295-306, 2011. ,
Transcription establishes microenvironments that organize euchromatin, 2017. ,
Spindle assembly checkpoint acquisition at the mid-blastula transition, PLoS One, vol.10, p.119285, 2015. ,
Pairing and anti-pairing: a balancing act in the diploid genome, Curr. Opin. Genet Dev, vol.37, pp.119-128, 2016. ,
Ploidy Manipulation of Zebrafish Embryos with Heat Shock 2 Treatment, J Vis Exp, p.54492, 2016. ,
From egg to gastrula: how the cell cycle is remodeled during the Drosophila mid-blastula transition, Annu Rev. Genet, vol.48, pp.269-294, 2014. ,
G2 acquisition by transcription-independent mechanism at the zebrafish midblastula transition, Dev. Biol, vol.326, pp.131-142, 2009. ,
New insights into the maternal to zygotic transition, Development, vol.141, pp.3834-3841, 2014. ,
In vivo live imaging of RNA polymerase II transcription factories in primary cells, Genes Dev, vol.27, pp.767-777, 2013. ,
The Topology of Transcription by Immobilized Polymerases, Experimental Cell Research, vol.229, issue.2, pp.167-173, 1996. ,
Cohesin facilitates zygotic genome activation in zebrafish, Development, vol.145, p.156521, 2018. ,
TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish, Curr. Biol, vol.14, pp.593-598, 2004. ,
Transcription?replication conflicts: how they occur and how they are resolved, Nature Reviews Molecular Cell Biology, vol.17, issue.9, pp.553-563, 2016. ,
A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes, Cell, vol.149, pp.618-629, 2012. ,
Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo, Cell, vol.153, pp.976-987, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02323564
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription, Cell, vol.169, p.19, 2017. ,
Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis, Elife, vol.5, p.20148, 2016. ,
3D structures of individual mammalian genomes studied by single-cell Hi-C, Nature, vol.544, pp.59-64, 2017. ,
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations, PLoS Biol, vol.4, p.138, 2006. ,
TopHat: discovering splice junctions with RNA-Seq, Bioinformatics, vol.25, issue.9, pp.1105-1111, 2009. ,
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses, Nucleic Acids Res, vol.43, pp.51-51, 2015. ,
BLAT-The BLAST-Like Alignment Tool, Genome Res, vol.12, pp.656-664, 2002. ,
Clustal Omega, Accurate Alignment of Very Large Numbers of Sequences, Methods in Molecular Biology, pp.105-116, 2013. ,
STAR: ultrafast universal RNA-seq aligner, Bioinformatics, vol.29, pp.15-21, 2013. ,
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004. ,
Jalview Version 2-a multiple sequence alignment editor and analysis workbench, Bioinformatics, vol.25, pp.1189-1191, 2009. ,
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays, BMC Bioinforma, vol.9, p.67, 2008. ,
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R, BMC Bioinforma, vol.12, p.35, 2011. ,
Translocation of histone H1 subtypes between chromatin and cytoplasm during mitosis in normal human fibroblasts, Cytom. Part A, vol.77, pp.478-484, 2010. ,
Maximal chromosome compaction occurs by axial shortening in anaphase and depends on Aurora kinase, Nat. Cell Biol, vol.9, pp.822-831, 2007. ,
Variations in dysfunction of sister chromatid cohesion in esco2 mutant zebrafish reflect the phenotypic diversity of Roberts syndrome, Dis. Models & Mech, vol.8, pp.941-955, 2015. ,