J. L. Bowman, T. Kohchi, K. T. Yamato, J. Jenkins, S. Shu et al., Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome, Cell, vol.171, issue.2, pp.287-304, 2017.

C. F. Delwiche and E. D. Cooper, The evolutionary origin of a terrestrial flora, Current Biology, vol.25, pp.899-910, 2015.

D. S. Domozych, Z. A. Popper, and I. Sørensen, Charophytes: Evolutionary Giants and Emerging Model Organisms. Frontiers in plant science, vol.7, p.1470, 2016.

C. Finet, R. E. Timme, C. F. Delwiche, and F. Marlétaz, Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants, Current Biology, vol.20, issue.24, pp.2217-2239, 2010.

J. Vries and J. M. Archibald, Plant evolution: landmarks on the path to terrestrial life, New Phytologist, vol.217, issue.4, pp.1428-1462, 2018.

C. Lemieux, C. Otis, and M. Turmel, A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies, BMC Biology, vol.5, issue.1, 2007.

K. Hori, F. Maruyama, T. Fujisawa, T. Togashi, N. Yamamoto et al., Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation, Nature Communications, 2014.

. Dec, , vol.5, 2018.

D. S. Domozych and C. E. Domozych, Multicellularity in green algae: upsizing in a walled complex, Frontiers in Plant Science, vol.5, issue.649, pp.1-8, 2014.

J. G. Umen, Green Algae and the Origins of Multicellularity in the Plant Kingdom. Cold Spring Harbor Perspectives in Biology, vol.6, pp.1-27, 2014.

R. E. Timme, T. R. Bachvaroff, and C. F. Delwiche, Broad Phylogenomic Sampling and the Sister Lineage of Land Plants, PLoS ONE, vol.7, issue.1, p.29696, 2012.

N. J. Wickett, S. Mirarab, N. Nguyen, T. Warnow, E. Carpenter et al., Phylotranscriptomic analysis of the origin and early diversification of land plants, PNAS, vol.111, issue.45, pp.4859-68, 2014.

M. Lavy and M. Estelle, Mechanisms of auxin signaling, Development, vol.143, pp.3226-3235, 2016.

O. A. Leyser and . Signaling, Plant Physiology, vol.176, issue.1, pp.465-79, 2018.

C. Finet, A. Berne-dedieu, C. P. Scutt, and F. Marletaz, Evolution of the ARF gene family in land plants: Old domains, new tricks, Molecular Biology and Evolution, vol.30, pp.45-56, 2013.

J. Giraudat, B. M. Hauge, C. Valon, J. Smalle, F. Parcy et al., Isolation of the Arabidopsis ABI3 Gene by Positional Cloning. THE PLANT CELL ONLINE, vol.4, pp.1251-61, 1992.

K. Yamasaki, T. Kigawa, M. Seki, K. Shinozaki, and S. Yokoyama, DNA-binding domains of plant-specific transcription factors: structure, function, and evolution, Trends in Plant Science, vol.18, issue.5, pp.267-76, 2013.

M. Galli, A. Khakhar, Z. Lu, Z. Chen, S. Sen et al., The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family, Nature Communications, vol.9, issue.1, p.30375394, 2018.

R. C. O'malley, S. C. Huang, L. Song, M. G. Lewsey, A. Bartlett et al., Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape, Cell, vol.165, issue.5, pp.1280-92, 2016.

A. Stigliani, R. Martin-arevalillo, J. Lucas, A. Bessy, T. Vinos-poyo et al., Capturing Auxin Response Factors Syntax Using DNA Binding Models. Molecular Plant, vol.12, pp.822-854, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02088272

S. K. Mutte, H. Kato, C. Rothfels, M. Melkonian, G. K. Wong et al., Origin and evolution of the nuclear auxin response system. eLife, pp.1-25, 2018.

C. Wang, Y. Liu, S. Li, and G. Han, Insights into the Origin and Evolution of the Plant Hormone Signaling Machinery, Plant Physiology, vol.167, issue.3, pp.872-86, 2015.

T. J. Guilfoyle, The PB1 Domain in Auxin Response Factor and Aux/IAA Proteins: A Versatile Protein Interaction Module in the Auxin Response, The Plant Cell, vol.27, pp.33-43, 2015.

M. H. Nanao, T. Vinos-poyo, G. Brunoud, E. Thé-venon, M. Mazzoleni et al., Structural basis for oligomerization of auxin transcriptional regulators, Nature communications, vol.5, p.3617, 2014.
URL : https://hal.archives-ouvertes.fr/hal-00984482

D. A. Korasick, C. S. Westfall, S. Goo, M. H. Nanao, R. Dumas et al., Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression, PNAS, vol.111, issue.14, pp.5427-5459, 2014.
URL : https://hal.archives-ouvertes.fr/hal-00984283

F. Parcy, T. Vernoux, and R. Dumas, A Glimpse beyond Structures in Auxin-Dependent Transcription, Trends in Plant Science, vol.21, pp.574-83, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01331341

T. J. Guilfoyle and G. Hagen, Getting a grasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions, Plant Science, vol.190, pp.82-90, 2012.

H. Szemenyei, M. Hannon, and J. Long, TOPLESS Mediates Auxin-Dependent Transcriptional Repression During Arabidopsis Embryogenesis, Science, vol.319, p.1384, 2008.

M. F. Wu, N. Yamaguchi, J. Xiao, B. Bargmann, E. M. Sang et al., Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate, eLife, vol.13, issue.4, pp.1-20, 2015.

D. C. Dinesh, L. I. Villalobos, C. Abel, and S. , Structural Biology of Nuclear Auxin Action, Trends in Plant Science, vol.21, issue.4, pp.302-318, 2016.

T. Vernoux, G. Brunoud, E. Farcot, V. Morin, H. Van-den-daele et al., The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Molecular Systems Biology, vol.7, pp.508-508, 2014.
URL : https://hal.archives-ouvertes.fr/hal-00828880

S. Piya, S. K. Shrestha, B. Binder, C. N. Stewart, and T. Hewezi, Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. Frontiers in Plant Science, vol.5, 2014.

S. A. Trigg, R. M. Garza, A. Macwilliams, J. R. Nery, A. Bartlett et al., CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping, Nature Methods, vol.14, issue.8, pp.819-844, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02626983

M. Lavy, M. J. Prigge, S. Tao, S. Shain, A. Kuo et al., Constitutive auxin response in Physcomitrella reveals complex interactions between Aux/IAA and ARF proteins, eLife, vol.1, issue.5, 2016.

J. W. Chandler, Auxin response factors, Plant, cell & environment, vol.39, pp.1014-1042, 2016.

B. Causier, M. Ashworth, W. Guo, and B. Davies, The TOPLESS Interactome: A Framework for Gene Repression in Arabidopsis, Plant Physiology, vol.158, pp.423-461, 2012.

B. Causier, J. Lloyd, L. Stevens, and B. Davies, TOPLESS co-repressor interactions and their evolutionary conservation in plants, Plant Signaling & Behavior, vol.7, issue.3, pp.325-333, 2012.

E. Flores-sandoval, D. M. Eklund, and J. L. Bowman, A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha, PLoS Genetics, vol.11, issue.5, pp.1-26, 2015.

H. Kato, K. Ishizaki, M. Kouno, M. Shirakawa, J. L. Bowman et al., Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha, PLoS Genetics, vol.11, issue.5, pp.1-26, 2015.

J. L. Bowman, L. N. Briginshaw, T. J. Fisher, and E. Flores-sandoval, Something ancient and something neofunctionalized-evolution of land plant hormone signaling pathways. Current Opinion in Plant Biology, vol.47, pp.64-72, 2019.

E. Flores-sandoval, D. M. Eklund, S. Hong, J. P. Alvarez, T. J. Fisher et al., Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha, New Phytologist, vol.218, issue.4, pp.1612-1642, 2018.

K. Ohtaka, K. Hori, Y. Kanno, M. Seo, and H. Ohta, Primitive Auxin Response without TIR1 and Aux / IAA in the Charophyte Alga Klebsormidium nitens 1, Plant Physiology, vol.174, pp.1621-1653, 2017.

C. Lemieux, C. Otis, and M. Turmel, Comparative Chloroplast Genome Analyses of Streptophyte Green Algae Uncover Major Structural Alterations in the Coleochaetophyceae and Zygnematophyceae. Frontiers in plant science, vol.7, 2016.

M. Turmel, C. Otis, and C. Lemieux, Tracing the Evolution of Streptophyte Algae and Their, Genome Biology and Evolution, vol.5, issue.10, pp.1817-1852, 2013.

N. Matasci, L. Hung, Y. Z. Carpenter, E. J. Wickett, N. J. Mirarab et al., , p.0

, Plants (1KP) project, GIGA SCIENCE, vol.3, issue.17, pp.1-10, 2014.

K. Swaminathan, K. Peterson, and T. Jack, The plant B3 superfamily, Trends in Plant Science, vol.13, issue.12, pp.647-55, 2008.

D. R. Boer, A. Freire-rios, . Van-den, W. Berg, T. Saaki et al., Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors, Cell, vol.156, issue.3, pp.577-89, 2014.

L. A. Kelley, S. Mezulis, C. M. Yates, M. N. Wass, and M. Sternberg, The Phyre2 web portal for protein modelling, prediction and analysis, Nature Protocols, vol.10, issue.6, pp.845-58, 2017.

Y. Kagaya, K. Ohmiya, and T. Hattori, RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants, Nucleic Acids Research, vol.27, issue.2, pp.470-478, 1999.

R. Martin-arevalillo, M. H. Nanao, A. Larrieu, T. Vinos-poyo, and D. Mast, Structure of the Arabidopsis TOPLESS corepressor provides insight into the evolution of transcriptional repression, PNAS, vol.114, issue.30, pp.8107-8119, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01605698

H. Choi, M. Seo, and H. Cho, Two TPL-Binding Motifs of ARF2 Are Involved in Repression of Auxin Responses, Frontiers in Plant Science, vol.9, issue.372, pp.1-9, 2018.

J. Ke, H. Ma, X. Gu, A. Thelen, J. S. Brunzelle et al., Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors, Science Advances, vol.1, issue.6, pp.1-12, 2015.

J. Collins, K. O'grady, S. Chen, and W. Gurley, The C-terminal WD40 repeats on the TOPLESS co-repressor function as a protein-protein interaction surface, Plant Molecular Biology, vol.100, issue.1-2, p.30783952, 2019.

M. D. Allen, K. Yamasaki, M. Ohme-takagi, M. Tateno, and M. Suzuki, A novel mode of DNA recognition by a ?sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA, The EMBO Journal, vol.17, issue.18, pp.5484-96, 1998.

A. Dereeper, V. Guignon, G. Blanc, S. Audic, S. Buffet et al., fr: robust phylogenetic analysis for the, Nucleic Acids Research, vol.36, pp.465-474, 2008.
URL : https://hal.archives-ouvertes.fr/lirmm-00324099

A. Dereeper, S. Audic, J. Claverie, and G. Blanc, BLAST-EXPLORER helps you building datasets for phylogenetic analysis, BMC Evolutionary Biology, vol.10, issue.8, pp.8-13, 2010.

D. Golovenko, E. Manakova, L. Zakrys, M. Zaremba, G. Sasnauskas et al., Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme, Nucleic Acids Research, vol.42, pp.4113-4135, 2014.