Biomineralization in humans: making the hard choices in life, Annu Rev Genet, vol.43, pp.119-161, 2009. ,
The SCPP gene family and the complexity of hard tissues in vertebrates, Cells Tissues Organs, vol.194, pp.108-120, 2011. ,
Mineralized tissue and vertebrate evolution: the secretory, Proc Natl Acad Sci USA, vol.100, pp.4060-4065, 2003. ,
The origin and evolution of enamel mineralization genes, Cells Tissues Organs, vol.186, pp.25-48, 2007. ,
The junctional epithelium: from health to disease, J Dent Res, vol.84, pp.9-20, 2005. ,
Characterization of Apin, a secreted protein highly expressed in tooth-associated epithelia, J Cell Biochem, vol.103, pp.941-56, 2008. ,
The odontogenic ameloblast-associated protein (ODAM) cooperates with RUNX2 and modulates enamel mineralization via regulation of MMP-20, J Cell Biochem, vol.111, pp.755-67, 2010. ,
Odontogenic ameloblast-associated protein (ODAM) mediates junctional epithelium attachment to teeth via integrin-ODAM-rho guanine nucleotide exchange factor 5 (ARHGEF5)-RhoA signaling, J Biol Chem, vol.290, pp.14740-53, 2015. ,
Expression pattern of odontogenic ameloblast-associated and amelotin during formation and regeneration of the junctional epithelium, Eur Cells Mater, vol.20, pp.393-402, 2010. ,
Inactivation of AMTN, ODAM and SCPPPQ1 proteins of a specialized basal lamina that attaches epithelial cells to tooth mineral, Sci Rep, vol.7, p.46683, 2017. ,
The amyloid protein APin is highly expressed during enamel mineralization and maturation in rat incisors, Eur J Oral Sci, vol.115, pp.153-60, 2007. ,
The enamel protein ODAM promotes mineralization in a collagen matrix, Connect Tissue Res, vol.59, issue.sup1, pp.62-68, 2018. ,
Inactivation of the odontogenic ameloblast-associated gene affects the integrity of the junctional epithelium and gingival healing, Eur Cells Mater, vol.30, pp.187-99, 2015. ,
Expression of odontogenic ameloblast-associated protein (ODAM) in dental and other epithelial neoplasms, Mol Med, vol.14, pp.318-344, 2008. ,
Expression pattern, subcellular localization, and functional implications of ODAM in ameloblasts, odontoblasts, osteoblasts, and various cancer cells, Gene Expr Patterns, vol.12, pp.102-110, 2012. ,
Hen's teeth with enamel cap: from dream to impossibility, BMC Evol Biol, vol.8, p.246, 2008. ,
Loss of teeth and enamel in tetrapods: fossil record, genetic data and morphological adaptations, J Anat, vol.214, pp.477-501, 2009. ,
The enamelin genes in lizard, crocodile, and frog and the pseudogene in the chicken provide new insights on enamelin evolution in tetrapods, Mol Biol Evol, vol.27, pp.2078-94, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00575924
Evidence for a single loss of mineralized teeth in the common avian ancestor, Science, vol.346, p.1254390, 2014. ,
Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes, BMC Evol Biol, vol.13, p.20, 2013. ,
Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales, Syst Biol, vol.57, pp.15-37, 2008. ,
Molecular evolution of dentin phosphoprotein among toothed and toothless animals, BMC Evol Biol, vol.9, p.299, 2009. ,
Molecular decay of the tooth gene enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals, PLoS Genet, vol.5, pp.1-12, 2009. ,
Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales, Proc R Soc B, vol.278, pp.993-1002, 2011. ,
Evolution of Klk4 and enamel maturation in eutherians, Biol Chem, vol.395, pp.1003-1016, 2014. ,
Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia, Mol Phylogenet Evol, vol.91, pp.178-93, 2015. ,
Inactivation of C4orf26 in toothless placental mammals, Mol Phylogenet Evol, vol.95, pp.34-45, 2016. ,
A genomics approach reveals insights into the importance of gene losses for mammalian adaptations, Nat Commun, vol.9, p.1215, 2018. ,
Evolutionary analysis suggests that AMTN is enamel-specific and a candidate for AI, J Dent Res, vol.91, pp.1085-1094, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01545488
Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta, BMC Evol Biol, vol.15, p.148, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01212816
Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data, Bioinformatics, vol.28, pp.1647-1656, 2012. ,
A novel method for rapid multiple sequence alignment based on fast Fourier transform, Nucleic Acids Res, vol.30, pp.3059-66, 2002. ,
MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol Biol Evol, vol.30, pp.772-80, 2013. ,
MACSE: multiple alignment of coding SEquences accounting for frameshifts and stop codons, PLoS One, vol.6, p.22594, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01773250
MACSE v2: toolkit for the alignment of coding sequences accounting for frameshifts and stop codons, Mol Biol Evol, vol.35, pp.2582-2586, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01925698
Phylogenetic analysis using parsimony (* and other methods). Sinauer associates, 2002. ,
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, vol.22, pp.2688-90, 2006. ,
RAxML version 8: a tool for phylogenetic analysis and postanalysis of large phylogenies, Bioinformatics, vol.30, pp.1312-1313 ,
Creating the CIPRES science gateway for inference of large phylogenetic trees, Gateway Computing Environments Workshop, vol.2010, pp.1-8 ,
A rapid bootstrap algorithm for the RAxML web servers, Syst Biol, vol.57, pp.758-71, 2008. ,
A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters, Mol Biol Evol, vol.28, pp.729-773, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-02299080
Joint reconstruction of divergence times and lifehistory evolution in placental mammals using a phylogenetic covariance model, Evolution, vol.66, pp.1773-87, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02289793
A molecular phylogeny for bats illuminates biogeography and the fossil record, Science, vol.307, pp.580-584, 2005. ,
Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification, Science, vol.334, pp.521-525, 2011. ,
The phylogenetic affinities of the extinct glyptodonts, Curr Biol, vol.26, pp.141-56, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01879335
Mammal madness: is the mammal tree of life not yet resolved?, Philos Trans R Soc B, vol.371, 2016. ,
Spectral shifts of mammalian ultraviolet-sensitive pigments (short wavelengthsensitive opsin 1) are associated with eye length and photic niche evolution, Proc Roy Soc B, vol.282, 2015. ,
PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals, Ecology, vol.90, p.2648, 2009. ,
PAML 4: phylogenetic analysis by maximum likelihood, Mol Biol Evol, vol.24, pp.1586-91, 2007. ,
Estimating the rate of evolution of the rate of molecular evolution, Mol Biol Evol, vol.15, pp.1647-57, 1998. ,
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals, J Comp Biol, vol.11, pp.377-94, 2004. ,
Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved, RNA, vol.21, pp.1-12, 2015. ,
Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix, PLoS One, vol.7, p.49521, 2012. ,
The complete phylogeny of pangolins: scaling up resources for the molecular tracing of the most trafficked mammals on earth, J Heredity, vol.109, pp.347-59, 2017. ,
Controlling for phylogenetic relatedness and evolutionary rates improves the discovery of associations between species' phenotypic and genomic differences, Mol Biol Evol, vol.33, pp.2135-50, 2016. ,
Parallel adaptive radiations in two major clades of placental mammals, Nature, vol.409, pp.610-614, 2001. ,
Molecular phylogenetics and the origins of placental mammals, Nature, vol.409, pp.614-622, 2001. ,
Resolution of the early placental mammal radiation using Bayesian phylogenetics, Science, vol.294, pp.2348-51, 2001. ,
Molecular evidence for the major clades of placental mammals, J Mammal Evol, vol.8, pp.239-277, 2001. ,
A phylogenetic foundation for comparative mammalian genomics, Genome Informatics, vol.12, pp.141-54, 2001. ,
Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting, Mol Biol Evol, vol.19, pp.1656-71, 2002. ,
URL : https://hal.archives-ouvertes.fr/halsde-00192981
Placental mammal diversification and the Cretaceous-Tertiary boundary, Proc Natl Acad Sci, vol.100, pp.1056-61, 2003. ,
Molecules consolidate the placental mammal tree, Trends Ecol Evol, vol.19, pp.430-438, 2004. ,
The rise of placental mammals: origins and relationships of the major extant clades, pp.37-49, 2005. ,
Divergence date estimation and a comprehensive molecular tree of extant cetaceans, Mol Phylogenet Evol, vol.53, pp.891-906, 2009. ,
A phylogenetic blueprint for a modern whale, Mol Phylogenet Evol, vol.66, pp.479-506, 2013. ,
Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats, Proc Natl Acad Sci, vol.99, pp.1431-1437, 2002. ,
Mesozoic origin for West Indian insectivores, Nature, vol.429, pp.649-51, 2004. ,
Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals, Mol Phylogenet Evol, vol.121, pp.158-65, 2018. ,
A proboscidean from the late Oligocene of Eritrea, a "missing link" between early Elephantiformes and Elephantimorpha, and biogeographic implications, Proc Natl Acad Sci, vol.103, pp.17296-301, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00163067
A comprehensive genomic history of extinct and living elephants, Proc Natl Acad Sci U S A, vol.115, pp.2566-74, 2018. ,
Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation, Nucleic Acids Res, vol.44, p.103, 2016. ,
Gene expression neighborhoods, J Biol, vol.1, p.4, 2002. ,
The implications of the numerical dating of the Messel fossil deposit (Eocene, Germany) for mammalian biochronology, Ann Paleontol, vol.91, pp.329-364, 2005. ,
Loss of incisor enamel in marmosets, J Mammal, vol.59, pp.207-215, 1978. ,
Enamel structure in odontocete whales, Scan Microsc, vol.1, pp.1071-1080, 1987. ,
Ultrastructure of enamel and dentine in extant dolphins (Cetacea: Delphinoidea and Inioidea), Zoomorphology, vol.132, pp.215-240, 2013. ,
Enamel ultrastructure in fossil cetaceans (Cetacea: Archaeoceti and Odontoceti), PLoS One, vol.10, p.116557, 2015. ,
Changes in the tooth enamel of early Paleocene mammals allowing increased diet diversity, Nature, vol.328, pp.150-152, 1987. ,
Marching teeth of the manatee, Nat Hist, vol.92, pp.8-12, 1983. ,
Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants, PLoS Biol, vol.8, p.1000564, 2010. ,
Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences, Mol Biol Evol, vol.21, pp.1201-1214, 2004. ,
Cavefish and the basis for eye loss, Philos Trans Roy Soc B, vol.372, 2017. ,
Developmental basis of toothlessness in turtles: insight into convergent evolution of vertebrate morphology, Evolution, vol.67, pp.260-73, 2013. ,
Their loss is our gain: regressive evolution in vertebrates provides genomic models for uncovering human disease loci, J Med Genet, vol.54, pp.787-94, 2017. ,