EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats

Matúš Kalaš (1) , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann , Martin Jones , Anatole Chessel , Leandro Aluisio Scholz , Fabienne Rössler , Alexandre Dufour , John Bogovic , Chong Zhang , Dominic Waithe , Paula Sampaio (2) , Lassi Paavolainen , David Hörl , Sebastien Munck , Ofra Golani , Josh Moore , Alban Gaignard , Florian Levet , Perrine Paul-Gilloteaux (3) , Jon Ison , Kota Miura , Julien Colombelli (4)

1 UiB - University of Bergen
2 Universidade do Porto = University of Porto
3 SFR François Bonamy - Structure fédérative de recherche François Bonamy
4 Advanced Digital Microscopy

The ontology of bioimage informatics operations, topics, data, and formats What? EDAM-bioimaging is an extension of the EDAM ontology, dedicated to bioimage analysis, bioimage informatics, and bioimaging. Why? EDAM-bioimaging enables interoperable descriptions of software, publications, data, and workflows, fostering reliable and transparent science. How? EDAM-bioimaging is developed in a community spirit, in a welcoming collaboration between numerous bioimaging experts and ontology developers. How can I contribute? We need your expertise! You can help by reviewing parts of EDAM-bioimaging, posting comments with suggestions, requirements, or needs for clarification, or participating in a Taggathon or another hackathon. Please see https://github.com/edamontology/edam-bioimaging#contributing. EDAM-bioimaging is developed in an interdisciplinary open collaboration supported by the hosting institutions, participating individuals, and NEUBIAS COST Action (CA15124) and ELIXIR-EXCELERATE (676559) funded by the Horizon 2020 Framework Programme of the European Union. https://github.com/edamontology/edam-bioimaging @edamontology /edamontology/edam-bioimaging

Domaines: Recherche d'information [cs.IR]; Imagerie; Intelligence artificielle [cs.AI]; Algorithme et structure de données [cs.DS]; Traitement des images [eess.IV]

Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Alexander Kirschmann, et al.. EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats. NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩. ⟨hal-02267597⟩