Dietary intervention impact on gut microbial gene richness, Nature, vol.500, issue.7464, pp.585-593, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01001543
Diet rapidly and reproducibly alters the human gut microbiome, Nature, vol.505, issue.7484, pp.559-63, 2014. ,
The gut microbiota and host health: a new clinical frontier, Gut, vol.65, issue.2, pp.330-339, 2016. ,
Diet-microbiota interactions as moderators of human metabolism, Nature, vol.535, issue.7610, pp.56-64, 2016. ,
Functional interactions between the gut microbiota and host metabolism, Nature, vol.489, issue.7415, pp.242-251, 2012. ,
Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics, J Clin Inv, vol.124, issue.10, pp.4173-81, 2014. ,
Microbial metabolism of dietary components to bioactive metabolites: opportunities for new therapeutic interventions ,
, Genome Med, vol.8, issue.1, p.46, 2016.
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites, Proc Natl Acad Sci, vol.106, issue.10, pp.3698-703, 2009. ,
Small molecules from the human microbiota, Science, vol.349, issue.6246, p.1254766, 2015. ,
Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella, Cell Metab, vol.22, issue.6, pp.971-82, 2015. ,
Diet-induced extinctions in the gut microbiota compound over generations, Nature, vol.529, issue.7585, pp.212-217, 2016. ,
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa, Proc Natl Acad Sci, vol.107, issue.33, pp.14691-14697, 2010. ,
Whole grain consumption and risk of cardiovascular disease, cancer, and all cause and cause specific mortality: systematic review and dose-response meta-analysis of prospective studies, BMJ, vol.353, p.2716, 2016. ,
Whole-grain intake and total, cardiovascular, and cancer mortality: a systematic review and meta-analysis of prospective studies, Am J Clin Nutr, vol.104, issue.1, pp.164-72, 2016. ,
Whole grain, bran, and germ intake and risk of type 2 diabetes: a prospective cohort study and systematic review, PLoS Med, vol.4, issue.8, p.261, 2007. ,
Intake of whole grains is associated with lower risk of myocardial infarction: the Danish Diet, Cancer and Health Cohort, Am J Clin Nutr, vol.103, issue.4, pp.999-1007, 2016. ,
Food groups and risk of allcause mortality: a systematic review and meta-analysis of prospective studies, Am J Clin Nutr, vol.105, issue.6, pp.1462-73, 2017. ,
Effects of the regular consumption of wholemeal wheat foods on cardiovascular risk factors in healthy people, Nutr Metabol Cardiovasc Dis, vol.20, issue.3, pp.186-94, 2010. ,
Effect of increased consumption of wholegrain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomized controlled trial, Am J Clin Nutr, vol.92, issue.4, pp.733-773, 2010. ,
Whole grain compared with refined wheat decreases the percentage of body fat following a 12-week, energy-restricted dietary intervention in postmenopausal women, J Nutr, vol.142, issue.4, pp.710-716, 2012. ,
Whole grain rye intake, reflected by a biomarker, is associated with favorable blood lipid outcomes in subjects with the metabolic syndrome-a randomized study, PloS One, vol.9, issue.10, p.110827, 2014. ,
Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber, Am J Clin Nutr, vol.101, issue.2, pp.251-61, 2015. ,
Whole-grain foods do not affect insulin sensitivity or markers of lipid peroxidation and inflammation in healthy, moderately overweight subjects, J Nutr, vol.137, issue.6, pp.1401-1408, 2007. ,
Markers of cardiovascular risk are not changed by increased whole-grain intake: the WHOLEheart study, a randomised, controlled dietary intervention, Br J Nutr, vol.104, issue.1, pp.125-159, 2010. ,
Whole-grain wheat breakfast cereal has a prebiotic effect on the human gut microbiota: a double-blind, placebo-controlled, crossover study, Br J Nutr, vol.99, issue.1, pp.110-130, 2008. ,
Health benefits of whole grain phytochemicals, Crit Rev Food Sci Nutr, vol.50, issue.3, pp.193-208, 2010. ,
New hypotheses for the health-protective mechanisms of whole-grain cereals: what is beyond fibre?, Nutr Res Rev, vol.23, issue.01, pp.65-134, 2010. ,
Effects of dietary fiber and its components on metabolic health, Nutrients, vol.2, issue.12, pp.1266-89, 2010. ,
Characterization of amino acid-derived betaines by electrospray ionization tandem mass spectrometry, J Mass Spectrom, vol.47, issue.1, pp.79-88, 2012. ,
Patel AVJBs, ecology. Betaines and tertiary sulphonium compounds from 62 species of marine algae, Biochem Syst Ecol, vol.20, issue.4, pp.373-88, 1992. ,
Betaine: a key modulator of onecarbon metabolism and homocysteine status, Clin Chem Lab Med, vol.43, issue.10, pp.1069-75, 2005. ,
Betaine in human nutrition, Am J Clin Nutr, vol.80, issue.3, pp.539-588, 2004. ,
Trigonelline is a novel phytoestrogen in coffee beans, J Nutr, vol.139, issue.10, pp.1833-1841, 2009. ,
Anti-cariogenic effects of polyphenols from plant stimulant beverages (cocoa, coffee, tea), Fitoterapia, vol.80, issue.5, pp.255-62, 2009. ,
Diets rich in whole grains increase betainized compounds associated with glucose metabolism, Am J Clin Nutr, vol.108, issue.5, pp.971-980, 2018. ,
Amino acid-derived betaines dominate as urinary markers for rye bran intake in mice fed high-fat diet-a nontargeted metabolomics study, Mol Nutr Food Res, vol.59, pp.1550-62, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01269028
Whole grain intake associated molecule 5-aminovaleric acid betaine decreases ?-oxidation of fatty acids in mouse cardiomyocytes, Sci Rep, vol.8, issue.1, p.13036, 2018. ,
How does wheat grain, bran and aleurone structure impact their nutritional and technological properties?, Trends Food Sci Technol, vol.41, issue.2, pp.118-152, 2015. ,
Rye phenolics in nutrition and health, J Cereal Sci, vol.49, issue.3, pp.323-359, 2009. ,
Bioprocessing of wheat bran improves in vitro bioaccessibility and colonic metabolism of phenolic compounds, J Agric Food Chem, vol.57, issue.14, pp.6148-55, 2009. ,
The exogenous origin of trimethylamine in the mouse, Metabolism, vol.41, issue.2, pp.135-141, 1992. ,
Cereal foods are the major source of betaine in the Western diet-analysis of betaine and free choline in cereal foods and updated assessments of betaine intake, Food Chem, vol.145, pp.859-65, 2014. ,
Nontargeted metabolite profiling discriminates diet-specific biomarkers for consumption of whole grains, fatty fish, and bilberries in a randomized controlled trial, J Nutr, vol.145, issue.1, pp.7-17, 2015. ,
Bifidobacteria and their role in human health, J Ind Microbiol, vol.6, issue.4, pp.263-270, 1990. ,
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology, Gut, vol.65, issue.3, pp.426-462, 2016. ,
Effects of two wholegrain barley varieties on caecal SCFA, gut microbiota and plasma inflammatory markers in rats consuming low-and high-fat diets, Br J Nutr, vol.113, issue.10, pp.1558-70, 2015. ,
A polyphenol-rich cranberry extract protects from dietinduced obesity, insulin resistance and intestinal inflammation in association with increased Akkermansia spp. population in the gut microbiota of mice, Gut, vol.64, issue.6, pp.872-83, 2015. ,
Alterations of the human gut microbiome in multiple sclerosis, Nat Commun, vol.7, p.12015, 2016. ,
The Family Coriobacteriaceae, The Prokaryotes, 2014. ,
Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance, Gut Microbes, vol.5, issue.4, pp.544-51, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01608260
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon, ISME J, vol.6, issue.8, p.1535, 2012. ,
Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations, ISME J, vol.6, issue.10, p.1848, 2012. ,
Parasutterella, in associated with irritable bowel syndrome and intestinal chronic inflammation, J Gastroenterol Hepatol, vol.33, pp.1844-52, 2018. ,
Role of the gut microbiota in defining human health, Expert Rev Anti Infect Ther, vol.8, issue.4, pp.435-54, 2010. ,
Gut microbiota composition correlates with diet and health in the elderly, Nature, vol.488, issue.7410, p.178, 2012. ,
Desulfovibrio species are potentially important in regressive autism, Med Hypotheses, vol.77, issue.2, pp.270-274, 2011. ,
Desulfovibrio bacterial species are increased in ulcerative colitis, Dis Colon Rectum, vol.53, issue.11, pp.1530-1536, 2010. ,
Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue, Front Microbiol, vol.2, p.149, 2011. ,
URL : https://hal.archives-ouvertes.fr/inserm-00617647
Pretreatment with probiotic Bifico ameliorates colitis-associated cancer in mice: transcriptome and gut flora profiling, Cancer Sci, vol.109, issue.3, pp.666-77, 2018. ,
Feruloyl oligosaccharides stimulate the growth of Bifidobacterium bifidum, Anaerobe, vol.11, issue.4, pp.225-234, 2005. ,
Impact of wheat aleurone structure on metabolic disorders caused by a high-fat diet in mice, J Agric Food Chem, vol.62, issue.41, pp.10101-10110, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01268932
Metabolic profiling of sourdough fermented wheat and rye bread, Sci Rep, vol.8, issue.1, p.5684, 2018. ,
Development of an in vitro enzymic digestion method for removal of starch and protein and assessment of its performance using rye and wheat breads, J Cereal Sci, vol.29, issue.2, pp.139-52, 1999. ,
Formation of phenolic microbial metabolites and short-chain fatty acids from rye, wheat, and oat bran and their fractions in the metabolical in vitro colon model, J Agric Food Chem, vol.60, issue.33, pp.8134-8179, 2012. ,
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes, F1000Research, vol.5, p.1791, 2018. ,
QIIME allows analysis of highthroughput community sequencing data, Nat Methods, vol.7, issue.5, p.335, 2010. ,
Multivariate analysis of ecological data using CANOCO, 2003. ,