A new method for non-parametric multivariate analysis of variance, Aust. Ecol, vol.26, pp.32-46, 2001. ,
Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles, Environ. Microbiol, vol.16, pp.2831-2847, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01270208
An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards, J. Appl. Microbiol, vol.115, pp.163-170, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01268072
The microbiome of animals: implications for conservation biology, Int. J. Genomics, p.5304028, 2016. ,
Truffle-associated bacteria: extrapolation from diversity to function, True Truffle (Tuber spp.) in the World Soil Biology, 2016. ,
, , pp.301-317
New evidence for nitrogen fixation within the Italian white truffle Tuber magnatum, Fungal Biol, vol.114, pp.936-942, 2010. ,
Occurrence and diversity of bacterial communities in Tuber magnatum during truffle maturation, Environ. Microbiol, vol.9, pp.2234-2246, 2007. ,
Emergence shapes the structure of the seed microbiota, Appl. Environ. Microbiol, vol.81, pp.1257-1266, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01153480
The truffle microbiome: species and geography effects on bacteria associated with fruiting bodies of hypogeous Pezizales, Microb. Ecol, vol.72, pp.4-8, 2016. ,
Unraveling the plant microbiome: looking back and future perspectives, Front. Microbiol, vol.5, p.148, 2014. ,
Numerical Ecology With R, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00530195
Root microbiome relates to plant host evolution in maize and other Poaceae, Environ. Microbiol, vol.16, pp.2804-2814, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01010591
Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community, New Phytol, vol.210, pp.1369-1381, 2016. ,
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota, Nature, vol.488, pp.91-95, 2012. ,
New insights into the complex relationship between weight and maturity of Burgundy truffles (Tuber aestivum), PLoS One, vol.12, 2017. ,
Host genetic control of the microbiota mediates the Drosophila nutritional phenotype, Appl. Environ. Microbiol, vol.82, pp.671-679, 2016. ,
Possible involvement of Pseudomonas fluorescens and bacillaceae in structural modifications of Tuber borchii fruit bodies, Can. J. Microbiol, vol.47, pp.264-268, 2001. ,
The symbiosome: legume and rhizobia co-evolution toward a nitrogen-fixing organelle? Front, Aust. J. Ecol, vol.18, p.2229, 1993. ,
The ribosomal database project: improved alignments and new tools for rRNA analysis, Nucleic Acids Res, vol.37, 2009. ,
Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence, Sci. Rep, vol.7, p.9604, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01611454
Five years investigation of female and male genotypes in périgord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies, Environ. Microbiol, vol.19, pp.2604-2615, 2017. ,
Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development, Mycorrhiza, vol.26, pp.389-399, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01477465
Bacterial-fungal interactions: ecology, mechanisms and challenges, FEMS Microbiol. Rev, vol.42, pp.335-352, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01954717
, New insights into black truffle biology: discovery of the potential connecting structure between a Tuber aestivum ascocarp and its host root, vol.29, pp.219-226, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02177354
The combined effects of Pseudomonas fluorescens and Tuber melanosporum on the quality of Pinus halepensis seedlings, Mycorrhiza, vol.22, pp.429-436, 2012. ,
packfor: Forward Selection with Permutation (Canoco p.46) R package version 0.0-7/r58, 2009. ,
FROGS: find, rapidly, OTUs with galaxy solution, Bioinformatics, vol.34, pp.1287-1294, 2018. ,
Metacoder: an R package for visualization and manipulation of community taxonomic diversity data, PLoS Comput. Biol, vol.13, p.1005404, 2017. ,
The local environment determines the assembly of root endophytic fungi at a continental scale, Environ. Microbiol, vol.18, pp.2418-2434, 2016. ,
Mutabilis in mutabili: spatiotemporal dynamics of a truffle colony in soil, Soil Biol. Biochem, vol.90, pp.62-70, 2015. ,
A quest for indigenous truffle helper prokaryotes, Environ. Microbiol. Rep, vol.5, pp.346-352, 2013. ,
Microbiota and host nutrition across plant and animal kingdoms, Cell Host Microbe, vol.17, pp.603-616, 2015. ,
Role of nitrogen fixation in the autecology of Polaromonas naphthalenivorans in contaminated sediments, Environ. Microbiol, vol.14, pp.1544-1557, 2012. ,
Maturation-associated alterations of the biochemical characteristics of the black truffle Tuber melanosporum Vitt, Food Chem, vol.99, pp.394-400, 2006. ,
Entropy and diversity, Oikos, vol.113, pp.363-375, 2006. ,
Certainties and uncertainties about the life cycle of the Périgord black truffle (Tuber melanosporum Vittad, Ann. For. Sci, vol.73, pp.105-117, 2016. ,
Study of nitrogen and carbon transfer from soil organic matter to Tuber melanosporum mycorrhizas and ascocarps using 15N and 13C soil labelling and whole-genome oligoarrays, Plant Soil, vol.395, pp.351-373, 2015. ,
Carbon transfer from the host to Tuber melanosporum mycorrhizas and ascocarps followed using a 13C pulse-labeling technique, PLoS One, vol.8, p.64626, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01268445
Ecologically meaningful transformations for ordination of species data, Oecologia, vol.129, pp.271-280, 2001. ,
, Numerical Ecology, vol.24, 2012.
Forest soil bacteria: diversity, involvement in ecosystem processes, and response to global change. Microbiol, Mol. Biol. Rev, vol.81, pp.63-79, 2017. ,
Defining the core Arabidopsis thaliana root microbiome, Nature, vol.488, pp.86-90, 2012. ,
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis, Nature, vol.464, pp.1033-1038, 2010. ,
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data, PLoS One, vol.8, p.61217, 2013. ,
Monitoring the fate of a 30-year-old truffle orchard in Burgundy: from Tuber melanosporum to Tuber aestivum, Agrofor. Syst, vol.87, pp.1439-1449, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00915215
First identification of polymorphic microsatellite markers in the Burgundy truffle, Tuber aestivum (Tuberaceae). Appl. Plant Sci, vol.1, p.1200220, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01268760
Fine-scale genetic structure of natural Tuber aestivum sites in southern Germany, Mycorrhiza, vol.26, pp.895-907, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01496821
Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability, Environ. Microbiol, vol.17, pp.3039-3050, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01269423
Forty years of inoculating seedlings with truffle fungi: past and future perspectives, Mycorrhiza, vol.25, pp.77-81, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01269161
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle, Nat. Ecol. Evol, vol.2, pp.1956-1965, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02094494
Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set, Microbiol. Read. Engl, vol.148, pp.257-266, 2002. ,
Vegan: Community Ecology Package, 2015. ,
Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum (biovar) paraureolyticus, a ureaseproducing variant from cattle and humans, Int. J. Syst. Bacteriol, vol.48, pp.195-206, 1998. ,
Reevaluation of the life cycle of Tuber magnatum, Appl. Environ. Microbiol, vol.72, pp.2390-2393, 2006. ,
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies, Environ. Microbiol, vol.20, pp.1641-1650, 2018. ,
Estimating and controlling for spatial structure in the study of ecological communities, Glob. Ecol. Biogeogr, vol.19, pp.174-184, 2010. ,
Shelflife extension of fresh Tuber aestivum and Tuber melanosporum truffles by modified atmosphere packaging with microperforated films, J. Food Sci, vol.75, pp.225-233, 2010. ,
Tuber melanosporum: mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants, New Phytol, vol.189, pp.723-735, 2011. ,
Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum, New Phytol, vol.189, pp.710-722, 2011. ,
Troubles with truffles: unveiling more of their biology, New Phytol, vol.174, pp.256-259, 2007. ,
Impact of the competition between mating types on the cultivation of Tuber melanosporum: romeo and Juliet and the matter of space and time, Mycorrhiza, vol.24, pp.19-27, 2014. ,
Endogenous bacteria of Tuber aestivum ascocarps are potential biocontrol agents of microbial post-harvest deterioration of truffles, Int. J. Eng. Appl. Sci, vol.7, pp.97-106, 2015. ,
Diversity of culturable bacterial populations associated to Tuber borchii ectomycorrhizas and their activity on T. Borchii mycelial growth, FEMS Microbiol. Lett, vol.211, pp.195-201, 2002. ,
Black truffle, a hermaphrodite with forced unisexual behaviour, Trends Microbiol, vol.25, pp.784-787, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01575932
Polaromonas hydrogenivorans sp. nov., a psychrotolerant hydrogen-oxidizing bacterium from Alaskan soil, Int. J. Syst. Evol. Microbiol, vol.57, pp.616-619, 2007. ,
, Mycorrhizal Symbiosis, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01268065
Bacteria associated with truffle-fruiting bodies contribute to truffle aroma, Environ. Microbiol, vol.17, pp.2647-2660, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01579586
Sulfur volatiles of microbial origin are key contributors to human-sensed truffle aroma, Appl. Microbiol. Biotechnol, vol.99, pp.2583-2592, 2015. ,
Intraspecific genotypic variability determines concentrations of key truffle volatiles, New Phytol, vol.194, pp.823-835, 2012. ,
mlgsim: a program for detecting clones using a simulation approach, Mol. Ecol. Notes, vol.3, pp.329-331, 2003. ,
Symbiotic nitrogen fixation in legume nodules: metabolism and regulatory mechanisms, Int. J. Mol. Sci, vol.15, pp.19389-19393, 2014. ,
Ecology of the forest microbiome: highlights of temperate and boreal ecosystems, Soil Biol. Biochem, vol.103, pp.471-488, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01490075
The role of the microbiome of truffles in aroma formation: a meta-analysis approach, Appl. Environ. Microbiol, vol.81, pp.6946-6952, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01269458
Non-symbiotic bradyrhizobium ecotypes dominate North American forest soils, ISME J, vol.9, pp.2435-2441, 2015. ,
Micro-scale determinants of bacterial diversity in soil, FEMS Microbiol. Rev, vol.37, pp.936-954, 2013. ,
The sponge hologenome, vol.7, pp.135-151, 2016. ,
Host species effects on bacterial communities associated with the fruiting bodies of Tuber species from the Sichuan Province in Southwest China, Mycol. Prog, vol.17, pp.833-840, 2018. ,
The soil microbiome influences grapevine-associated microbiota, mBio, vol.6, pp.2527-2541, 2015. ,