Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia

Abstract : We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.
Document type :
Journal articles
Complete list of metadatas

Cited literature [15 references]  Display  Hide  Download

https://hal.archives-ouvertes.fr/hal-02215841
Contributor : Archive Ouverte Prodinra <>
Submitted on : Wednesday, July 31, 2019 - 8:06:51 PM
Last modification on : Friday, August 2, 2019 - 3:01:49 AM

File

Honorio-Coronado et al, 2019 (...
Explicit agreement for this submission

Identifiers

Collections

Citation

Euridice N. Honorio Coronado, Céline Blanc-Jolivet, Malte Mader, Carmen R. García-Dávila, Alexandre M. Sebbenn, et al.. Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia. Conservation Genetics Resources, Springer, 2019, 11 (37), pp.1-4. ⟨10.1007/s12686-019-01081-3⟩. ⟨hal-02215841⟩

Share

Metrics

Record views

14

Files downloads

9