Model checking to assess T-helper cell plasticity, Frontiers in Bioengineering and Biotechnology, vol.2, 2015. ,
Abduction based drug target discovery using boolean control network, Computational Methods in Systems Biology, pp.57-73, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01522072
Systematic search for recipes to generate induced pluripotent stem cells, PLOS Computational Biology, vol.7, issue.12, p.1002300, 2011. ,
Logic-based and cellular pharmacodynamic modeling of bortezomib responses in U266 human myeloma cells, Journal of Pharmacology and Experimental Therapeutics, vol.354, issue.3, pp.448-458, 2015. ,
Mathematical modelling of molecular pathways enabling tumour cell invasion and migration, PLOS Computational Biology, vol.11, issue.11, p.1004571, 2015. ,
URL : https://hal.archives-ouvertes.fr/inserm-02141625
Logical modeling of lymphoid and myeloid cell specification and transdifferentiation, Proceedings of the National Academy of Sciences, vol.114, issue.23, pp.5792-5799, 2017. ,
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks, BMC Systems Biology, vol.7, issue.1, p.140, 2013. ,
Forcing cells to change lineages, Nature, vol.462, issue.7273, pp.587-594, 2009. ,
A Boolean model of the cardiac gene regulatory network determining first and second heart field identity, PLOS ONE, vol.7, pp.1-10, 2012. ,
An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency, Nucleic Acids Research, vol.44, issue.3, pp.1203-1215, 2016. ,
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network, PLOS ONE, vol.6, issue.8, p.22649, 2011. ,
Temporal Reprogramming of Boolean Networks, Proc. 15th Conference on Computational Methods for Systems Biology, vol.10545, pp.179-195, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01589251
Taming asynchrony for attractor detection in large Boolean networks, IEEE/ACM transactions on computational biology and bioinformatics, vol.16, issue.1, pp.31-42, 2018. ,
ASSA-PBN: A toolbox for probabilistic boolean networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.15, issue.4, pp.1203-1216, 2018. ,
Boolean modeling reveals the necessity of transcriptional regulation for bistability in PC12 cell differentiation, Frontiers in Genetics, vol.7, p.44, 2016. ,
A decomposition-based approach towards the control of Boolean networks, Proc. 9th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, pp.11-20, 2018. ,
An efficient approach towards the sourcetarget control of Boolean networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019. ,
A modelling approach to explain mutually exclusive and co-occurring genetic alterations in bladder tumorigenesis, Cancer Research, p.602, 2015. ,
Algorithm for cellular reprogramming, Proceedings of the National Academy of Sciences, vol.114, issue.45, pp.11832-11837, 2017. ,
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance, BMC Systems Biology, vol.3, issue.1, p.1, 2009. ,
Computing combinatorial intervention strategies and failure modes in signaling networks, Journal of Computational Biology, vol.17, issue.1, pp.39-53, 2010. ,
Concise review: A population shift view of cellular reprogramming, STEM CELLS, vol.32, issue.6, pp.1367-1372, 2014. ,
A decade of transcription factor-mediated reprogramming to pluripotency, Nature Reviews Molecular Cell Biology, vol.17, issue.3, pp.183-193, 2016. ,
Cell fate reprogramming by control of intracellular network dynamics, PLOS Computational Biology, vol.11, pp.1-24, 2015. ,