Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Sina Adl 1 David Bass 2 Christopher Lane Julius Lukeš 3 Conrad Schoch 4 Alexey Smirnov Sabine Agatha 5 Cédric Berney 6 Matthew Brown Fabien Burki 7 Paco Cárdenas 8 Ivan Čepička Ludmila Chistyakova Javier del Campo 9 Micah Dunthorn 10 Bente Edvardsen 11 Yana Eglit Laure Guillou 12 Vladimír Hampl Aaron Heiss Mona Hoppenrath Timothy James 13 Sergey Karpov Eunsoo Kim 14 Martin Kolisko Alexander Kudryavtsev Daniel Lahr Enrique Lara 15, 16 Line Le Gall 17 Denis Lynn David Mann Ramon Massana I Molera Edward Mitchell Christine Morrow 18 Jong Soo Park Jan Pawlowski 19 Martha Powell Daniel Richter Sonja Rueckert Lora Shadwick Satoshi Shimano Frederick Spiegel Guifré Torruella I Cortes Noha Youssef Vasily Zlatogursky Qianqian Zhang 20
Abstract : This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
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Sina Adl, David Bass, Christopher Lane, Julius Lukeš, Conrad Schoch, et al.. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology, Wiley, 2018, 66, pp.4-119. ⟨10.1111/jeu.12691⟩. ⟨hal-02167105⟩

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