Changing patterns of infectious disease, Nature, vol.406, pp.762-770, 2000. ,
DOI : 10.1038/35021206
Environmental change and infectious disease: how new roads affect the transmission of diarrheal pathogens in rural Ecuador, Proc Natl Acad Sci, vol.103, issue.51, pp.19460-19465, 2006. ,
Effects of host diversity on infectious disease, Ann Rev Ecol Evol Syst, vol.43, issue.1, pp.157-82, 2012. ,
Impacts of biodiversity on the emergence and transmission of infectious diseases, Nature, vol.468, pp.647-52, 2010. ,
Global trends in emerging infectious diseases, Nature, vol.451, pp.990-994, 2008. ,
DOI : 10.1038/nature06536
URL : http://europepmc.org/articles/pmc5960580?pdf=render
Antibiotic resistance -the need for global solutions, Lancet Infect Dis, vol.13, issue.12, pp.1057-98, 2013. ,
DOI : 10.1016/s1473-3099(13)70318-9
URL : https://dukespace.lib.duke.edu/dspace/bitstream/10161/8996/1/CarsEtAl_AntibioticResistance-TheNeedforGlobalSolutions_LancetInfectiousDiseases_2013%5b1%5d.pdf
Modeling infectious diseases, 2008. ,
Measles metapopulation dynamics: a gravity model for epidemiological coupling and dynamics, Am Nat, vol.164, issue.2, pp.267-81, 2004. ,
DOI : 10.2307/3473444
Imperfect vaccines and the evolution of pathogen virulence, Nature, vol.414, issue.6865, pp.751-757, 2001. ,
Evolutionary biology and the avoidance of antimicrobial resistance, Evol Appl, vol.2, issue.1, pp.40-51, 2009. ,
Scheduling of measles vaccination in low-income countries: Projections of a dynamic model, Vaccine, vol.27, issue.31, pp.4090-4098, 2009. ,
Global eradication of measles: an epidemiologic and economic evaluation, J Infect Dis, vol.204, issue.1, pp.98-106, 2011. ,
DOI : 10.1093/infdis/jir096
URL : https://academic.oup.com/jid/article-pdf/204/suppl_1/S98/18083976/jir096.pdf
Infectious Diseases of Humans: Dynamics and Control, 1991. ,
, Numerical Methods for Ordinary Differential Equations. Springer Undergraduate Mathematics Series, 2010.
Exact stochastic simulation of coupled chemical reactions, J Phys Chem, vol.81, pp.2340-61, 1977. ,
DOI : 10.1021/j100540a008
An agent-based model to study the epidemiological and evolutionary dynamics of influenza viruses, BMC Bioinformatics, vol.12, p.87, 2011. ,
Domain-specific languages: An annotated bibliography, ACM SIGPLAN Not, vol.35, issue.6, pp.26-36, 2000. ,
When and how to develop domain-specific languages, ACM Comput Surv, vol.37, issue.4, pp.316-360, 2005. ,
DOI : 10.1145/1118890.1118892
URL : https://ir.cwi.nl/pub/10893/10893D.pdf
Domain-specific Languages. USA: Pearson Education, 2010. ,
KENDRICK: A Domain Specific Language and platform for mathematical epidemiological modelling, the 11th IEEE RIVF International Conference on Computing & Communication Technologies-Research, Innovation, and Vision for Future (RIVF), pp.132-139, 2015. ,
Explicit composition constructs in dsls: The case of the epidemiological language kendrick, Proceedings of the 11th Edition of the International Workshop on Smalltalk Technologies, IWST'16, pp.20-12011, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01336631
Separation of concerns in epidemiological modelling, Companion Proceedings of the 15th International Conference on Modularity, MODULARITY Companion, pp.196-200, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01377096
Stochastic automata networks, Computational Probability, pp.113-51, 2000. ,
DOI : 10.1007/978-1-4757-4828-4_5
URL : https://hal.archives-ouvertes.fr/hal-00203526
, Pharo by Example. Kehrsatz: Square Bracket Associates, p.333, 2009.
The Moose Book. Switzerland: Self Published, 2010. ,
Open Source Software for Numerical Computation in Pharo ,
Agile visualization with Roassal, Deep Into Pharo, pp.209-248, 2013. ,
Agile visualization, 2016. ,
Moldable tools, 2016. ,
Reflective facilities in Smalltalk-80, ACM Sigplan Notices, vol.24, issue.10, pp.327-362, 1989. ,
DOI : 10.1145/74877.74911
Practical dynamic grammars for dynamic languages, The 4th Workshop on Dynamic Languages and Applications (DYLA 2010), 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00746253
Embedding languages without breaking tools, European Conference on Object-Oriented Programming, pp.380-404, 2010. ,
DOI : 10.1007/978-3-642-14107-2_19
URL : http://scg.unibe.ch/archive/papers/Reng10aEmbeddingLanguages.pdf
,
, Infectious Diseases of Humans, vol.1, 1991.
Open Source Software for Numerical Computation ,
A domain-specific language for models of landscape dynamics, Ecol Model, vol.141, pp.1-18, 2001. ,
Design of a domain specific language for modelling processes in landscapes, Ecol Model, vol.220, pp.3527-3562, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00619737
Atmol: A domain-specific language for atmospheric modelling, Special Issue on Domain-Specific Languages Part I, vol.9, pp.289-303, 2001. ,
A Domain-Specific Language to Study the Interactions Between Malaria Infections and Drug Treatments, Proceedings of the International Conference on Bioinformatics & Computational Biology, vol.2, pp.747-52, 2008. ,
Towards frabjous: a two-level system for functional reactive agent-based epidemic simulation, Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, pp.785-90, 2012. ,
,
, Matlab. the Language of Technical Computing
Python tools for epidemiology ,
Gillespie's Stochastic Simulation Algorithm (SSA) ,
FluTE, a publicly available stochastic influenza epidemic simulation model, PLoS Comput Biol, vol.6, issue.1, p.1000656, 2010. ,
DOI : 10.1371/journal.pcbi.1000656
URL : https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000656&type=printable
The gleamviz computational tool, a publicly available software to explore realistic epidemic spreading scenarios at the global scale, BMC Infect Dis, vol.11, p.37, 2011. ,
A generic open-source software framework supporting scenario simulations in bioterrorist crises, Biosecurity bioterrorism: biodefense Strateg Pract Sci, vol.11, issue.S1, pp.134-179, 2013. ,
DOI : 10.1089/bsp.2012.0071
Fred (a framework for reconstructing epidemic dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations, BMC Public Health, vol.13, issue.1, p.940, 2013. ,
DOI : 10.1186/1471-2458-13-940
URL : https://bmcpublichealth.biomedcentral.com/track/pdf/10.1186/1471-2458-13-940