Approximate maximum parsimony and ancestral maximum likelihood, IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol.7, pp.183-187, 2010. ,
, Natural Hybridization and Evolution, 1996.
, Hybrids in real time, vol.55, pp.46-56, 2006.
, Genetics and Systematics of Hybrid Species, pp.109-134, 2003.
The complexity of multiterminal cuts, SIAM J. Comput, vol.23, pp.864-894, 1994. ,
Reconstruction of evolutionary trees, Systematics Association Publication, pp.64-76, 1964. ,
Cases in which parsimony or compatibility will be positively misleading, Syst. Zool, vol.27, pp.401-410, 1978. ,
Toward defining the course of evolution: Minimum change for a specific tree topology, Syst. Zool, vol.20, pp.406-416, 1971. ,
, Parameterized Complexity Theory, 2006.
The Steiner problem in phylogeny is NP-complete, Adv. in Appl. Math, vol.3, pp.43-49, 1982. ,
, Phylogenetic Networks: Concepts, Algorithms and Applications, 2011.
Dendroscope 3: A program for computing and drawing rooted phylogenetic trees and networks, Syst. Biol, pp.1061-1067, 2012. ,
, MPNet: Maximum Parsimony on Networks, 2013.
When two trees go to war, J. Theoret. Biol, vol.269, pp.245-255, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00653683
Locating a tree in a phylogenetic network, Inform. Process. Lett, vol.110, pp.1037-1043, 2010. ,
Inferring phylogenetic networks by the maximum parsimony criterion: A case study, Mol. Biol. Evol, vol.24, pp.324-337, 2007. ,
Parsimony score of phylogenetic networks: Hardness results and a linear-time heuristic, IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol.6, pp.495-505, 2009. ,
Seeing the trees and their branches in the network is hard, Theoret. Comput. Sci, vol.401, pp.153-164, 2008. ,
Maximum parsimony on phylogenetic networks, Algorithms Mol. Biol, vol.7, p.9, 2012. ,
Rounding algorithms for a geometric embedding of minimum multiway cut, Proceedings of the Thirty-First Annual ACM Symposium on Theory of Computing (STOC '99), pp.668-678, 1999. ,
Constructing minimal phylogenetic networks from softwired clusters is fixed parameter tractable, Algorithmica, vol.68, pp.886-915, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02154980
On the elusiveness of clusters, IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol.9, pp.517-534, 2012. ,
Horizontal gene transfer in prokaryotes: Quantification and classification, Annu. Rev. Microbiol, vol.55, pp.709-742, 2001. ,
, The Tree of Life Web Project, 2007.
High frequency of horizontal gene transfer in the oceans, Science, vol.330, p.50, 2010. ,
Introduction to Phylogenetic Networks, RJR Productions, 2011. ,
Evolutionary phylogenetic networks: Models and issues, in The Problem Solving Handbook for, Computational Biology and Bioinformatics, pp.125-158, 2009. ,
Reconstructing recombination network from sequence data: The small parsimony problem, IEEE/ACM Trans. Comput. Biol. Bioinformatics, vol.4, pp.394-402, 2007. ,
Invitation to Fixed Parameter Algorithms, Oxford Lecture Ser. Math. Appl, vol.31, 2006. ,
Locating the vertices of a Steiner tree in an arbitrary metric space, Math. Programming, vol.9, pp.240-246, 1975. ,
, Phylogenetics, 2003.
Simple and improved parameterized algorithms for multiterminal cuts, Theory Comput. Syst, vol.46, pp.723-736, 2010. ,